Detailed information of gene12093.t2 in Actinoscyphia liui

Genomic Location: chr3:44763874...44782295
NR annotation: XP_020908677.2, homeobox protein six1b [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P41817Homeobox protein CUP9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CUP9 PE=1 SV=1
Q9ER75Iroquois-class homeodomain protein IRX-6 OS=Mus musculus OX=10090 GN=Irx6 PE=2 SV=2
Q94165Homeobox protein ceh-34 OS=Caenorhabditis elegans OX=6239 GN=ceh-34 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000714 (this species only)
Transcription factor familyHomeobox · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05920
all species →		Homeobox_KNHomeobox KN domainFamilyInterproscan
PF16878
all species →		SIX1_SDTranscriptional regulator, SIX1, N-terminal SD domainDomainInterproscan
PF00096
all species →		zf-C2H2Zinc finger, C2H2 typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR008422
all species →		DomainHomeobox KN domainInterproscan
IPR031701
all species →		DomainHomeobox protein SIX1, N-terminal SD domainInterproscan
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR050888
all species →		FamilyZinc Finger C2H2-type Transcription RegulatorsInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24406
all species →		TRANSCRIPTIONAL REPRESSOR CTCFL-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene12093.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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