Gene detail

Detailed information of gene12162.t1 in Actinoscyphia liui

Genomic Location: chr3:45970811...45982171
NR annotation: XP_020906834.1, cyclin-dependent kinase 6 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene12162.t1

ATGGCCAAAAAATACGAAGAGATTGCCGAGATCGGCACCGGTGCGTTTGGCACCGTCTACAAGGCCAGAGACCTTCAGAATGATGGTCAGTTCGTTGCACTGAAGAGAGTTCGTATCGTGAACACTGAGGAAGGCATCCCTCTCTCAACAATACGTGAAATCGCGCTCTTGAAGCAGATCGATCACTGTGCCCATCCAAACGTTGTCCGTCTGTTGGATATTTTCCATATTCCAATGGTTTTATTAAAAGAGACACACCTTAATCTAGTGTTTGAGCATGTGGAACAGGATCTAGCTGCTTTCATTGATGACTGTCCCCCTCCAGGGATCAGTGAATGGAAGGCCAAAGACATCTCATACCAACTCTTGAATGGTGTTGATTTTTTACATACTCATTGCATTATTCATCGTGACCTCAAGCCCCAAAACATCCTCATCACAACAGACGGTCAAGTTAAAATTGCTGATTTTGGGTTGGCGAGAGTTTATAAAGATGCCATGGCACTAACCTCTGTCGTGGTAACTCTATGGTACCGTGCACCAGAAGTGTTACTCCAGTCCAGTTATGCTACAGCCATAGATATTTGGAGTGTAGCTTGCATAATAGCTGAACTTTATAACAGAACTCCTTTGTTTGAAGGCAAATCAGAAATGAACCAACTAGCAAAAATATTCAGTGTGATAGGATTGCCACCACAAGAAGAGTGGCCACAAGATGTATCCCTGCCATGGCCATCGTTTCACAAGTACAACCCTGAATCCCTAGAAATCATTATTCCAGAAATGTGTCCTGATGGTATTGACTTAATGAAGAAAATGTTAGTATTTCATGGCAAGGACAGACCATCTGCCTGTGAAGCAATGCAGCACCCGTACTTTAGTGAATTTATTAACCAAGACACTGACAAGGAAAATTCACAGAGAAGCTCCAATACAAAAGTATATGTATACAGTGAAAACGAGTCCTGCAGTATACTGTCATGAGCCAGCATGTTCTCATCTACAGAGTCTTTAGTACAGTGGGGTTCAGAAAGGACATCAAGGGCTAGCTACAGAGGAAGCCATAGATGTGATAAATGGACTATGTGTTCAACAGATAAGAGTATTTTAGTTTTATAGTGTTATTTATTAAAAGGTAAGTCTTAATTTTCGGCTGGAAAGAAATTTTATTTTTCTATCTCATCTCTTGTTATTCAAGCAAGCAACATGAAGGAAATGTCTTTAATTTTATTGTCTTATATTGAGGGTTTTTATGTAGGAACCAAGAATGTCCTTGGTTTTTCATTGAAGTCGTTTTAGTTGGACAGAATGTTAATGTTGAAACTGGTTTGTGGCCCCAAAAGATTTATTGTTATTCATTTTAAACAGTCATAACTTACAACCATTGTTATTCAAGTACGACCCTAAGTATATGCATTAAAACCAACCCCAGTCTAGATGTCCGTCAATTAAAATAGTTTAGCCAGGATTGGTTAAAGATGTATTTTCCAACCAAACAAGACGTTTTGATCAAAGGTCGCACTTCAACGACAATATGGTTGTAATCTTTGAGTTTCTTAAAACTTGAGCCTCAGTTATCTTAGTTCAGGAAAATTAGAAAACTCTATCTGACATGAGTAATTGCATGCAGGACACCACAAAATGTAGAGGGATTTCACAGCAACCATGTCTGTGAAAAAATGTCTTTATTTTGATTTGACATTTTTCTCACACCTTTTAAAATGGATGGTTACTGTGAAATCCCAGTACAAAGTTATAATGTGTTGTATTTGCTCAATCTCTTTGTTGAATAAAGCTTGGTACACACTAGGAGACATTTTGCAGGGACAAAAAGTGGGAACAGATCATCCTCCCTATATGCAGCACTCTGGACAGTTTGCATGTTTCATACACATGTGGGGATTACATGTACATCAAAACCATGTAGTGGGGATAGATCCCAACAACAGTGCACACGGTGCTACACTCAATATTTGGGTCACTTTGTCCCTGCTTCGTGTCCCACAAATTCAAACTACCGTAGTTTGAATTCAGAGAGCTTGTCCCATAATATATATATTTCCATGAAAACAGGCAATACACATGTTCCTGCAACTGTCCTCTGGTGTTTGCCAAGCTTAAAGTGTACATGTATTTGTACAAACTTTCAGCAGTATTAATATTTAGCAGTAAGCAGGACTTAAATGCAGTAAATCAGGAAAACCCTTCTTGGAAACCAAGAATTCAGTAACTGAGTATTCTCTTCAGTAATAATATTATGTAAAAGAAAACAAAACTTGGATGACTTCAATCTTAAATGTTTAGAATGCTAATTGATATATTTTACAAATTCAAAGTGACTTATTAACCTATATTATTAATAGTATTTTATAATTTGGTGAGTGTTATAAGGATAGCAAATTTATAAAGTTGTGTGGAAGAATTCCAAAAGTAGGATTTTTGGTGTTTTTTTAAACGTTTTCCCTGAATGTTACTATTTTCATGAAACACTGATGTTTCTGGTGTCATTCAGTATATGTTAGACTACTGTGCATGGTACTATTATCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q00534	Cyclin-dependent kinase 6 OS=Homo sapiens OX=9606 GN=CDK6 PE=1 SV=1
Q64261	Cyclin-dependent kinase 6 OS=Mus musculus OX=10090 GN=Cdk6 PE=1 SV=2
Q91727	Cyclin-dependent kinase 4 OS=Xenopus laevis OX=8355 GN=cdk4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000516 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050108 all species →	Family	Cyclin-dependent kinase	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24056 all species →	CELL DIVISION PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000082 all species →	Biological Process	G1/S transition of mitotic cell cycle	Interproscan
GO:0000307 all species →	Cellular Component	cyclin-dependent protein kinase holoenzyme complex	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0004693 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0010033 all species →	Biological Process	obsolete response to organic substance	Interproscan
GO:0010389 all species →	Biological Process	regulation of G2/M transition of mitotic cell cycle	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0030332 all species →	Molecular Function	cyclin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene12162.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.