Detailed information of gene12371.t1 in Actinoscyphia liui

Genomic Location: chr3:49182137...49252352
NR annotation: XP_020899697.1, collagen alpha-1(I) chain [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P39060Collagen alpha-1(XVIII) chain OS=Homo sapiens OX=9606 GN=COL18A1 PE=1 SV=5
P39061Collagen alpha-1(XVIII) chain OS=Mus musculus OX=10090 GN=Col18a1 PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20010Collagen_trimerCollagen trimerization domainDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00041fn3Fibronectin type III domainDomainInterproscan
PF06482EndostatinCollagenase NC10 and EndostatinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR048287DomainThrombospondin-like, N-terminal domainInterproscan
IPR045463DomainCollagen type XV/XVIII, trimerization domainInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR010515DomainCollagenase NC10/endostatinInterproscan
IPR053330FamilyMucin-22-likeInterproscan
IPR016186Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37000MUCIN-22Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan

TOP