Gene detail

Detailed information of gene12422.t1 in Actinoscyphia liui

Genomic Location: chr3:50092684...50096253
NR annotation: XP_020895077.1, 40S ribosomal protein S13 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49393	Small ribosomal subunit protein uS15 OS=Xenopus laevis OX=8355 GN=rps13 PE=1 SV=2
Q56JX8	Small ribosomal subunit protein uS15 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3
Q6ITC7	Small ribosomal subunit protein uS15 OS=Gallus gallus OX=9031 GN=RPS13 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008229 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00312 all species →	Ribosomal_S15	Ribosomal protein S15	Domain	Interproscan
PF08069 all species →	Ribosomal_S13_N	Ribosomal S13/S15 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009068 all species →	Homologous_superfamily	uS15/NS1, RNA-binding domain superfamily	Interproscan
IPR000589 all species →	Family	Small ribosomal subunit protein uS15	Interproscan
IPR023029 all species →	Family	Small ribosomal subunit protein uS15, archaea/eukaryotes	Interproscan
IPR012606 all species →	Domain	Small ribosomal subunit protein uS15, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11885 all species →	RIBOSOMAL PROTEIN S15P/S13E	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0070181 all species →	Molecular Function	small ribosomal subunit rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02953	RP-S13e, RPS13; small subunit ribosomal protein S13e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.