Gene detail

Detailed information of gene12571.t2 in Actinoscyphia liui

Genomic Location: chr3:52213776...52227323
NR annotation: XP_020905143.1, fibropellin-1 isoform X1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene12571.t2

ATGATAATCCATTTGGAGTCGTGCATCCAACTTGTCCAAAACGTTTTCTTCGGGATGAAGACTCTCCAAGCCCTGAAGGTTAATCGAGCGTTTTCCTTGTTGTTAATAGTGGCCCTCGCAGACTTGGCGCAGCCTTGTATTCTACTTTTAAATGGATGGACTAGAATGAGCGCTGGCGAGAGAGCTAAGCTGGTGAAAGTTGTGTTCATCGGGAAAGTAGTGGATGTGTATCCCATGGACCCACAGACGCAGACATACGCAGCTGAGTTTGAGATCTTCAGAATCCTGAAAGGCGAGCGCATCGTGAATGAAGTACTTGAGTTGCACCCTGGGCCTACAGTCAAGGTGTATGGATTTGGAGAGAAGCGATTATGTTATTCTGAGGTTTACACCGAGGAAATTCACCTGGTGTTCATGGTTATCGAGCCCAAATCACGACTCTTGGTCGCACGGTATGATGACATCTTTGGTGCAACCTCTCCTGTTACGACAGAAAATGAAAACGAGATCCTCGGCGCATTAGGCTGGAAGCCTTGGTCTTCGTGGTCCACGTGTACTCGTAGTTGCGACGGTGGACTTCAGTGGAAAACCAGGGAATGTGCAGGAGACAAATGTGATGGTAGAACACGAGAGGGAAGGAAATGTAACTTCTTCAACTGTTACGGAATTAAAGATGTTGGCCAATACTTCAGTCCTCAACCAAGCAGAGCATCGCCGCTCCGCACACGAATAGCCCGTCACGTGACCTTACAAGGAATAACAGCCTTATCCCTACCAACTTCCAAAGTCTTTCAATACTACTTTCCAGACGAGTATTCCATCACTATAACGTTCCGACCCGTGCAATACTCCGATATTTACCTCTTAGCATTGTACGACTCCTCCAATAACTTGCTGTTTGGGATTCGTCTGACGTCGGGTTTCTTAACGTTTGAGTTAGCAAAGAAAACACAGTACATGCACCGGCAATGGTCGCTGGACTTTAATGTCCAAATCTCTGCCAACAAGTGGCACAGTGTAACTTTTAGCCTTGAAACAAAGCAAATCACCATGTACTGGGACTGCCAGAAGGTTGGCACCAAGCCACTTCCTGGTAGATTTTCATTCGCTCCAGATCCTTCTGGAACAATACACCTTGGAAAACCGTTCTTCAGCTTTGACCAAGGAAAGAAAAATATAGAAATAGACGAGCTGTACTTTGTACCTGACGTCCAGGCAGCCAAGCAACAGTGTTATAGCCCTAGCTTCTCATCGATGGTGAGTCAACGAAACAATATCGAAGCTAGTGGTTCTGCCCCCATCGAGCGACACGAAGGATCAGGATTATCCAACTATGTTGGCGATAAAGATCAAGTAGAGACTGCGTGGTCCCAATGGTCACCGTGTTCTACAACATGTGGTCAAGGCGTTCGTCGTCGAGTTATGATGTGTGTCAACTTAGATGACGGTCCACCAGATGCAGAATGTCTACAAGTGTTGCAAACATCGGAAGAAAAACCCTGTAATTTACGAGACTGCCCCGGACGCTGCTCGAAGCCTTGCTTAAATGATGGGTACTGTAACAGTCACAATAAATGTCAATGCAAAGCTGGTTACCATGGAGACAACTGCGAGAAGGTTCGTTGTAAAGTGCAGTGTCTCAATGGTGGAAAATGTGTTGGACCAAATGTCTGTAAATGTGCGTCAGGATATACTGGCAAACAATGCGATAAACCGATATGTACGTCACCTTGCCAAAATGGCGGCACATGTGTTCGTCCTAACGTCTGTCGATGTCAGGCAGGCTATCAACAACCAAACTGTAGAGCTGCATGTTACCCTGCATGTATCAATGGTGGCAGATGTGTCGGTCCGAACACTTGCCGTTGTCCTCGAGGATTTATTGGCAAACTGTGTCAAAAAGCGTTCTGTAGTCGACCGTGTCGGAATGGTGGTAAATGTTATGCCCCTAATTTGTGTTCATGTTCATATGGATGGTACGGCCCAAGATGCGACAAAGCTCGATGTCTTCGGAAATGTATAAATGGCGGGAAATGTGCCAGGCCAAACATGTGTTTGTGTCCAGGAGGAATGTATGGCTACTACTGTCAGTACAGATTCAAATAG

Transcript

gene12571.t2

ATTCGATTGAGAGGAGAGTCTCAGTTGGGGCACGCTCACTTCTGATTCGGTCTGATGGCCTTGTAACACAATCTGAAAGCCTACAGCATCAACAAAGTACAGTTTAGCTGAAAGACTACATCACGGGAAGTGTTGACAATGATAATCCATTTGGAGTCGTGCATCCAACTTGTCCAAAACGTTTTCTTCGGGATGAAGACTCTCCAAGCCCTGAAGGTTAATCGAGCGTTTTCCTTGTTGTTAATAGTGGCCCTCGCAGACTTGGCGCAGCCTTGTATTCTACTTTTAAATGGATGGACTAGAATGAGCGCTGGCGAGAGAGCTAAGCTGGTGAAAGTTGTGTTCATCGGGAAAGTAGTGGATGTGTATCCCATGGACCCACAGACGCAGACATACGCAGCTGAGTTTGAGATCTTCAGAATCCTGAAAGGCGAGCGCATCGTGAATGAAGTACTTGAGTTGCACCCTGGGCCTACAGTCAAGGTGTATGGATTTGGAGAGAAGCGATTATGTTATTCTGAGGTTTACACCGAGGAAATTCACCTGGTGTTCATGGTTATCGAGCCCAAATCACGACTCTTGGTCGCACGGTATGATGACATCTTTGGTGCAACCTCTCCTGTTACGACAGAAAATGAAAACGAGATCCTCGGCGCATTAGGCTGGAAGCCTTGGTCTTCGTGGTCCACGTGTACTCGTAGTTGCGACGGTGGACTTCAGTGGAAAACCAGGGAATGTGCAGGAGACAAATGTGATGGTAGAACACGAGAGGGAAGGAAATGTAACTTCTTCAACTGTTACGGAATTAAAGATGTTGGCCAATACTTCAGTCCTCAACCAAGCAGAGCATCGCCGCTCCGCACACGAATAGCCCGTCACGTGACCTTACAAGGAATAACAGCCTTATCCCTACCAACTTCCAAAGTCTTTCAATACTACTTTCCAGACGAGTATTCCATCACTATAACGTTCCGACCCGTGCAATACTCCGATATTTACCTCTTAGCATTGTACGACTCCTCCAATAACTTGCTGTTTGGGATTCGTCTGACGTCGGGTTTCTTAACGTTTGAGTTAGCAAAGAAAACACAGTACATGCACCGGCAATGGTCGCTGGACTTTAATGTCCAAATCTCTGCCAACAAGTGGCACAGTGTAACTTTTAGCCTTGAAACAAAGCAAATCACCATGTACTGGGACTGCCAGAAGGTTGGCACCAAGCCACTTCCTGGTAGATTTTCATTCGCTCCAGATCCTTCTGGAACAATACACCTTGGAAAACCGTTCTTCAGCTTTGACCAAGGAAAGAAAAATATAGAAATAGACGAGCTGTACTTTGTACCTGACGTCCAGGCAGCCAAGCAACAGTGTTATAGCCCTAGCTTCTCATCGATGGTGAGTCAACGAAACAATATCGAAGCTAGTGGTTCTGCCCCCATCGAGCGACACGAAGGATCAGGATTATCCAACTATGTTGGCGATAAAGATCAAGTAGAGACTGCGTGGTCCCAATGGTCACCGTGTTCTACAACATGTGGTCAAGGCGTTCGTCGTCGAGTTATGATGTGTGTCAACTTAGATGACGGTCCACCAGATGCAGAATGTCTACAAGTGTTGCAAACATCGGAAGAAAAACCCTGTAATTTACGAGACTGCCCCGGACGCTGCTCGAAGCCTTGCTTAAATGATGGGTACTGTAACAGTCACAATAAATGTCAATGCAAAGCTGGTTACCATGGAGACAACTGCGAGAAGGTTCGTTGTAAAGTGCAGTGTCTCAATGGTGGAAAATGTGTTGGACCAAATGTCTGTAAATGTGCGTCAGGATATACTGGCAAACAATGCGATAAACCGATATGTACGTCACCTTGCCAAAATGGCGGCACATGTGTTCGTCCTAACGTCTGTCGATGTCAGGCAGGCTATCAACAACCAAACTGTAGAGCTGCATGTTACCCTGCATGTATCAATGGTGGCAGATGTGTCGGTCCGAACACTTGCCGTTGTCCTCGAGGATTTATTGGCAAACTGTGTCAAAAAGCGTTCTGTAGTCGACCGTGTCGGAATGGTGGTAAATGTTATGCCCCTAATTTGTGTTCATGTTCATATGGATGGTACGGCCCAAGATGCGACAAAGCTCGATGTCTTCGGAAATGTATAAATGGCGGGAAATGTGCCAGGCCAAACATGTGTTTGTGTCCAGGAGGAATGTATGGCTACTACTGTCAGTACAGATTCAAATAGTAATTGGAATAATAACTACCTATACAAACTGCACATGAAAAGGCGGAGGTACCCTATAATGGACAATACACACGAGAGAAGGATTACAATTACATTACCATTGAAACCCGGGGGGGGGGGGGGG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002852 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03146 all species →	NtA	Agrin NtA domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF19030 all species →	TSP1_ADAMTS	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR050969 all species →	Family	Developmental Signaling Modulators	Interproscan
IPR004850 all species →	Domain	NtA (N-terminal agrin) domain	Interproscan
IPR008993 all species →	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan
IPR048287 all species →	Domain	Thrombospondin-like, N-terminal domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14949 all species →	EGF-LIKE-DOMAIN, MULTIPLE 7, 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043113 all species →	Biological Process	receptor clustering	Interproscan
GO:0043236 all species →	Molecular Function	laminin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene12571.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.