Gene detail

Detailed information of gene12712.t1 in Actinoscyphia liui

Genomic Location: chr3:54793890...54798131
NR annotation: XP_020895215.1, T-box transcription factor T isoform X1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q17134	T-box transcription factor T homolog 1 OS=Branchiostoma floridae OX=7739 GN=TBXT PE=2 SV=1
P80492	T-box transcription factor T homolog 2 OS=Branchiostoma floridae OX=7739 GN=TBXT PE=2 SV=1
P79777	T-box transcription factor T OS=Gallus gallus OX=9031 GN=TBXT PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004180 (this species only)
Transcription factor family	T-box · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907 all species →	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR046360 all species →	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR001699 all species →	Family	T-box transcription factor	Interproscan
IPR036960 all species →	Homologous_superfamily	T-box superfamily	Interproscan
IPR018186 all species →	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR002070 all species →	Family	Transcription factor, Brachyury	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267 all species →	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001707 all species →	Biological Process	mesoderm formation	Interproscan
GO:0001708 all species →	Biological Process	cell fate specification	Interproscan
GO:0003007 all species →	Biological Process	heart morphogenesis	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10172	BRA, T; brachyury protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.