Genomic Location: chr3:55475088...55520786
NR annotation: XP_031559571.1, serine/threonine-protein kinase MRCK alpha-like isoform X2 [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families
| CDS |
| gene12743.t2 |
| Transcript |
| gene12743.t2 |
| Protein |
| gene12743.t2 |
| UniProt accession | Description |
|---|---|
| Q5VT25 | Serine/threonine-protein kinase MRCK alpha OS=Homo sapiens OX=9606 GN=CDC42BPA PE=1 SV=1 |
| Q3UU96 | Serine/threonine-protein kinase MRCK alpha OS=Mus musculus OX=10090 GN=Cdc42bpa PE=1 SV=2 |
| O54874 | Serine/threonine-protein kinase MRCK alpha OS=Rattus norvegicus OX=10116 GN=Cdc42bpa PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002040 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00130 all species → | C1_1 | Phorbol esters/diacylglycerol binding domain (C1 domain) | Domain | Interproscan |
| PF15796 all species → | KELK | KELK-motif containing domain of MRCK Ser/Thr protein kinase | Coiled-coil | Interproscan |
| PF00780 all species → | CNH | CNH domain | Repeat | Interproscan |
| PF01576 all species → | Myosin_tail_1 | Myosin tail | Coiled-coil | Interproscan |
| PF08826 all species → | DMPK_coil | DMPK coiled coil domain like | Coiled-coil | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002219 all species → | Domain | Protein kinase C-like, phorbol ester/diacylglycerol-binding domain | Interproscan |
| IPR000095 all species → | Domain | CRIB domain | Interproscan |
| IPR001180 all species → | Domain | Citron homology (CNH) domain | Interproscan |
| IPR031597 all species → | Domain | KELK-motif containing domain | Interproscan |
| IPR046349 all species → | Homologous_superfamily | C1-like domain superfamily | Interproscan |
| IPR050839 all species → | Family | Rho-associated Serine/Threonine Kinase | Interproscan |
| IPR002928 all species → | Domain | Myosin tail | Interproscan |
| IPR001849 all species → | Domain | Pleckstrin homology domain | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR014930 all species → | Domain | Myotonic dystrophy protein kinase, coiled coil | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22988 all species → | MYOTONIC DYSTROPHY S/T KINASE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004674 all species → | Molecular Function | protein serine/threonine kinase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005856 all species → | Cellular Component | cytoskeleton | Interproscan |
| GO:0018107 all species → | Biological Process | peptidyl-threonine phosphorylation | Interproscan |
| GO:0031032 all species → | Biological Process | actomyosin structure organization | Interproscan |
| GO:0016459 all species → | Cellular Component | myosin complex | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006468 all species → | Biological Process | protein phosphorylation | Interproscan |
gene12743.t2.Genes whose expression across the transcriptome samples of Actinoscyphia liui tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinoscyphia liui, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
