Gene detail

Detailed information of gene12747.t1 in Actinoscyphia liui

Genomic Location: chr3:55536381...55547309
NR annotation: XP_020894228.1, la-related protein 7 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene12747.t1

ATGGGAAGTGGTTCGAACGCAAAGAGGCAGACCAGCCAAGGAAGTGTGCAAGATGACAAGCAAGATGAAAGTGACAGCTCGCAGATTAAGAAACACAGAAAAAGAACGAAGAAACTAGTATCACAGCTTAAACAACAGATTGAGTTTTACTTCAGTGATTCCAATTTACAAAAAGACAGATTTTTGAAACAAGAAATCATCAAGAATCCAGATGGATATATACAGATTAAGATAATAGCAGATTTTAACAGAATGAAGCAGATGACAGATGATATTGGATTAGTAGTAAAGGCAATCAAGTCATCAGAACTTTTCCAGCTGAATGATGATGAGACCATGGTGAAGCGAATTGCTCCTTTGCCTGAAGCAAAAAATGTGGATGCAGAGACAATTTATGTTGAAAATTTGCCACCATACACTGACCATGACTGGTTAAGAAAGATATTCTCACAGTTTGGAAAGGTCACATATGTCAGCATACCTCGATTCCAACACACACATGATATCAAGGGATTTGCTTTCATAGAGTTTGAAAACTCAACAGAGGCTGGTGACGCAGTTAAGGCATTTCCTAAAGAATCAGAAGAAAAAGAAAACGGTCAAAACGAAGACCACAAACCAAAACGGCGAAAGAGATCACACAGTGAGTCTGATGTAGATAACAGTAAGCAAAGTGCGAAAGCAGAAAGAAAAAGACGTCGAACAACTAGTGAATCTTCCGCCGACTCACAGGAAGGGAACTTGGACTCACCGAAGAAGAAACAACGGTTAGTTTTGCCAGAATGTCAGCCCGCAAAGATTAATGAAGCTGCAGGCGAAGGCTCTGAGAGTTTAGACAAGGGAAAAGTACGAAAGCGTAAAAGGAATGACAAAAGCGTTCATTGGAAACCCGAAGAGAACGAAAATCCAAGCGATGTAACACATTCTAAGACGGAATCGGAAGAGGAAGGAAAAGCCAGTAAAATACAGAAAAGTTCTGAGTCCGACTCCAATGCGGAGAATCCCGAAAGTGAAGAAGGAAAAAAGAAGCAACACAAGAAACGAAAACGTAAAGTTAAACCGGAAAAGAAGGAAGCAAAATTACCACAACTTCGTGTCATCCCCAAGCTCGAGTGGATGCAACTAAAAGCAGAGTACAAAAAACTTCAAAGAGAATCAATGCAGGAACTCAAGAAACAACTACAAGACTGCGCCGACAAGCAGGACGGTGATACCCAAGAACAGAAACCAAATAACCCAGCTACAAAGAAACAAGAAAACAAGGACCAGGCTTCTGTAGTCAAGGAGCTGCCTTTCACCCCTGGTGTAGTGCTCCATTTTAAATGTGCAGAGACTGATCTTCCTAAGTCAGAAATTCGTGAAAGGATAACAACACATGCACCTGTTGCATACATCGACGTTAAAGAAGGGGCTGGAGAGGGCTATGTGAGGTTCCACACAGCAGAAAACTGCTCAACTGTCATTGATAATATATCCAAAGATTCATCGTCTGGACTGGAGCTTGTTATGGTTACAGGAGAACAAGAGCACGAATACTGGAGAAAGATCAACGCTGATAGAGTGGCAAGGTTTCAAGCAAAACGAGAAAAGAAACGGGGAACTGAAAAGGTCGCAAGAAAAGTCGATGCTGTCCAGGTCCACCAGCAAGTATCACACATACGATTTGACGACGAATAGAATCAAAGATAACTCGTGGATGTCAGCAGCTCTTTGCGCAGATTGAAGGGTCATCCTTCGAAAGACTACTCGTGGATTGTAGGGACAACCTCGAAACTCGGCTGGCCTGTTAAGCAAATCATACGATCCATGAGCAAACGGATAAATCGTACTGAAGAAAACTTTGTTCAGTTTAGTTTTATTTTGTGTCTGGACATTTTTCCCCTGCCAACATGCAGAGATGTCTTCTAAGGCGAGGGACTCTGGGCGAGGGATAAGCTTCTCACAGGGTGGGCCAATTTATATGACTAATGCGTGTTCAAATAAAGAACATACTGCTGCATTTACAGTAAAGGCACATACAACCAGGAAAGAGTTTATTATTATATAGGTGCATTTTGGTAAATACGTACATGATATCGTATTGCACTGTTTGAACAACAAACTTTCTAAAAAAAAAATACGCGAAAAATCAATTGATTCTTTATAGGTTATCATTGCGTCTGGGGTTGTATTTTTCATTGAAGCTTTTGGCCTTTTCTTTCAAACTTTTCTTGTGGTTCATCTTTCGAGATCGTCTTTTTTCGCTGTCTGTCATTCCGTCATCTGTCGATACTGGAAACCAACCAGCAACCGTTCGCCACCATTCGTACTTGACACAAAGAATCGTAGCTGTATAAGAACATAAAAGACATTGTGAATGATGACGATGATCGAGTGATGATGATGATGACAATAGAGTGAAGATAATAAAACCGTGAAAACGTTTAGAACTGAATGGTACTAAATGGTGCAAAATCCTTTGTTTTCTATTTAACAATTAGAAAGCGAACTCGAGATTTCTATCGGCAGATCAAAGACGATAAAAATCGAGAGTGAGTCTTCTAATTGTTTTAGTAAAACTCTATTAGTGTTCATATTGCAAAAAAGAGGGCGTTTTCTCTACTCGCTATCTATCGGGTGATAGATAGCGAGTACAGTAGCCAATCAGAATGCGGGATTTGCAATAGAACACTAGTAGAGTTTTACTAATGTTTATTAGTGATATTTAGTACTAGTTAGTTACTACTTTTTCAACAGGGGCGTAAGCTACCTGTACTCCTGGACGTGCGTGCGTCACTCGAAAATGTTGGGGGATAAAAAGTAGCTTGTTTTAGAAAAAATGGGCCTTTGAGTTCAAATTTCACAATAGACGATTTTCATGATGGCGTCAATTGACTACAATTACCAGCATGCTTTACGAATTTTCTTTCTTATTCAAATTTGTATTCCCTCGTGAGAATAGAAGAACAATTGGCACTAATTATCTTACAAAAGAAAGTGGGCAAAGCATTCTGGTAGTTGTAGTCAAATGACGCCATGAAAATGGCCTATTGTGCGTTACTCCGAAAAAATCCTGGCTACGTCCCTGTTCCACGGTCATATTGTCTACACTCTATTCTCCTTCCCAGAGATACCCAGAATTCTTCACGATTCTGCGTGCGCAAACGAGGTCAGGGTAAAAATATTAAGAAATGATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZWE3	La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1
Q4G0J3	La-related protein 7 OS=Homo sapiens OX=9606 GN=LARP7 PE=1 SV=1
Q4R627	La-related protein 7 OS=Macaca fascicularis OX=9541 GN=LARP7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005516 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF08777 all species →	RRM_3	RNA binding motif	Domain	Interproscan
PF05383 all species →	La	La domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR014886 all species →	Domain	La protein, xRRM domain	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034887 all species →	Domain	LARP7, RNA recognition motif 1	Interproscan
IPR006630 all species →	Domain	La-type HTH domain	Interproscan
IPR002344 all species →	Family	Lupus La protein	Interproscan
IPR045180 all species →	Family	La domain containing protein	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22792 all species →	LUPUS LA PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15191	LARP7; La-related protein 7	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.