Gene detail

Detailed information of gene12864.t2 in Actinoscyphia liui

Genomic Location: chr3:57135369...57148356
NR annotation: KXJ28003.1, E3 ubiquitin-protein ligase TRIM71 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene12864.t2

Transcript

gene12864.t2

ATGATGATGATGACAGTAATGGTGATGGTGGTGGTAGTGGTGGAGGTCGCGGTGATGATGATGATGATGACAGTAATGGTGATGGTGGTGGTAGTGGTGGAGGTCGCGGTGATGATGATGATGATGACAGTAATGGTGATGGTTGTTTCCATTGAGGAGCTCCGTTCAAATCCACATCCCGAAGATCTTCTCCACAGACCAATATTCTGCTCTGACCATCAACAAGAAAAACTTAGGTACTTCTGTGAAACATGTGAACAAGCAATCTGTCGAGAGTGCACAATGACAACCCATTGCACCGGCAACCATAAATACACACAGCTAACCGACACCATCGATAAACAGACGTCATCCATAACTCAACTAGTCGATAAACTACGAAGAAAAATCCCCGTCGTAGAGCAATCCACCAAGGACGTAGAGGAAGTGACGTGTAGACTTGAAGCTAGAGCCGAGGTTGCTAAGTCAGAAGTACAAAAATGCTTCCCAAGAATCCTCAAGATTTTACAAGAACGAGAAAAGGGCATGATGAATGAAGTGGAGACGATCATGCGAAAGAAATCGAACGTCCTCAGCTTGCAGCAAGAAAGACTGGAAAACGAGCTGAAGAAACTCAGTATTACGTGTACTTTCACAGAACAAGTACTCCGACATGGAAATTCAGTGGAAATCCTTGTCGTCAAGAAGCAGCTCTGCGACAGACTTAACGAACTCATCACTGCCAAATTCCAAGGAGAACCTGAAGAAAATGATACCATTTACTTTGTAGCCAATCAGGACGAAGTGATTCGAGCAATTGAGAATCTAGGCCAAATCAAAACTAGTCAGGCGTTCCCTAACATGTCCTCGGTCGTTGATGGACCCCCTCGGGCCATTAAAGGAAGAACATCGAAATTCACAGTACAAACACGTGACCATCTTGGTAACCCATGCTCTGGTGGTGGAGAAGACGTGTTGGTGGATGTGTACTCATCAGATGGAAGGACAGTACCTGCTGAAGTAAGGCAACAACAACAACCACAACCACAACAACTTGGTTCAGAGTCTACCTACTCCAAGCGTCTTACTCGACAAACAACACAAAATGTCGAGGACCATCGTAATGGTTCGTACGGCGTATCGTACACGCCTCAAAGTAGTGGGATGCACAAGGTGAAGGATAAAGAGGTCTCAGTCACGGTGCGTGACAAGCACATCCAAGGAAGCCCATTCAAAGTGAACGTCACGGGTGCAGCCGAGTCGTTTGTACGATTTGGTCGAAAAGGATCGGACGTCGGCGAGTTCAATGGGATTTTTGGAGTTGCTGTTGATGACGAACACCGAATTATTGTCACTGATTGTCATAATCATCGCGTACAAGTGTTTAACTCACAAGGAGCGTTCATGTTTCAATTTGGTCGCAAGGGGGAGGGGAACGGTCAGTTCCAGTGCCCTACAGGTGTAGGCATAGATCCAGAGGGAAGGATTATCGTCTGCGAAAGACTGAGTTCTAAAATACAGTTATTTGATCGCGATGGGATGTTTCAACACAAGTTCCATGTGCCGGATCTGAAAGCTTCTACTTTGGCTGTTGATGAAAATAGAAGAATTGTTGTCGCAGATTCTGCCAATCGTTGCATCCATGTGATTTCTCTTGATACTGGGCAGTCGTTCAAGTTTGGTTCCTTCGGTGACAGTAATGGAGAGCTGAGCTACCCTTGTTATGTTGCAGTCAATTCACAAGGACATATCATTGTGTCAGACATGCACAGCCACCGTATACAAATATTCGACACGCGAGGCAGATTCCTGTTTAATTTCGGTCGTAAAGGAAACCAAGATGGTGAGCTCCAACGACCAACAGGTGTAGCCGTCATGCAAAGCGGAAACATCATAGTAGCAGACCGCGATAATCATCGCATTCAAATTTTCTCCAGCGATGGTCGATTTATTTCGAAGTTTGGAAGCAAAGGGGATGGCGAGGGGCAGTTGAACGACCCTCATGGCCTCGCTCTGACGCCTGATGGAAATATATGCGTAGCAGATTTCAGGAATAATAGAGTTCAGATAATACCTGGGATGCCTGGTGTACGATAATTATTGACCTCTGGAGTGACCCACAATGGTAATGAGCTTCATTAGGAGGTTGTTGTTGTTTGTTAGTATATACATTGTTGTTGAATTGCCAGACTGGATATTCTGGTGCAAGGTTCCATGTGGAATTCACCAGTGATCTGAACAGTAAGGGAAATCGTCGACACATCTAAACCTGCACACAAGTATTTGGATTCAGGAAAATCAGAGACGTCTTGTATGAAATGATTACAACCAATCTTTTTAGTTTGCTATATGGTATATTCGTGAAATTCTGAACATGAAAGAGAGCAGTCTCTGCCACAAACCCTTCAAGTTTCTTCTCATTCTAACCCACTCATGGCTTAATTTGCTGATCCTCCGTAACACAACACAAAATGATTGTACCCACCAACCGCAGTGCGGTTTAATATGCAACTCACTAATTTTCTTGGATTCTGTAAGAAATATTTCTTCTGATTTTCCACATCATATGATTACGGTTATAAGATAATCTACTTATTTCCTTTGCAACTCGCAAGGCATTACTTGCACATCCACGAGTTAAGGAAAATTACAACTTAGCTTCACTAGTTAACAAAAGTTTTAACTATATACCTATTTAAAAAACGTTGATAGCGGTTAATCTGAAATCTGAGACTGAAAGTGATCATGGGAGACTGGTTGCTTATCTCATTAAAATGCAAAATCTCACCCATCACCGGGAACCCAGGGGTTCGCTCGTTTCTCGCTCGCAGAAAAAATACCCTTATGGGAACGTTGTCTGCTAGAACTTGTTCCGGAAGAAAATTTATCTCATTTCTGATTGATTGACCAAATGAAGTCGACCAATCAGCATCAAGTTTATTTAGACATTTTTGAACGCCGCCATTTTAATTTTTTTCACTTCGGAACAAGTTCTAACAGACAACGAGATCTGTAAAGGACCCGAACAGATCCCAGGACCCGAACAGATCCCCAAAATGTACCCGAAATGATCCCCAACCTGCAAAGATCCCCAAAATAGGACTTGAACAGACCTGGAATGATTCCAAGCAATGAACTAATCGATAATGGAATGAAAACATCAAAACCAACAACGAAAATCGCTAATATTTTACTTATTTTACAAACTTCAGTTGAATCACGAAACTTGGTCGCCGACCATTTTCAGGGTTCCGTGACGGCTTCGCTCTCAAACTCGCTAAATAAAACCTGATTATTAAAAGAAACAACACAAAAAGGTGAAATAACTATCAATCTTTATATCTATCAACTTTATAGAACATAAAAGCTCTTAAATCCTAACTCTAGAAGTGAAATTCTAACGCTTATAAATTTGAACATAATGGTTGCCACAGGAAACCCACACCACATAAATGATGGTCTGTCTGTGATGTTGAACACAAAAAATTTAAAAAACTAAACTAAACCTTATAAAATTGTTCTCAGAATTTCGTGGTTCATATACGTAAAATAAGGAGATTATATACATAGTTTCCAACTATATATTTTTAATTAAATGTGATATATATTAGCAATTTTCTGAAAGTAAGGAAAAATATAAACGATTTTTATTTTGGTGTTGTTGTTTTCCTTTTATTATCCATTAGTCCATTCCTAGGAATCATTCGGGATCTGTTTGGGTCCCATCTGGGAATCTTTTCAGGTTGGGGATCTTTTCGGGTCCTGGGATCTGTTCGGGTCCTGGGATCTGTTCGGGTCCTGGGATCTGTTCGGGTCCTGGGATCTGTTCGGGTCCTGGGATCTGTTCGGGTCCTGGGATCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F6QEU4	E3 ubiquitin-protein ligase TRIM71 OS=Xenopus tropicalis OX=8364 GN=trim71 PE=3 SV=1
D2GXS7	Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca OX=9646 GN=TRIM2 PE=3 SV=1
F7H9X2	Tripartite motif-containing protein 2 OS=Callithrix jacchus OX=9483 GN=TRIM2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000442 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan
PF17170 all species →	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050952 all species →	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR003649 all species →	Domain	B-box, C-terminal	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104 all species →	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene12864.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.