Gene detail

Detailed information of gene12944.t1 in Actinoscyphia liui

Genomic Location: chr3:58374990...58383559
NR annotation: KAJ7380696.1, hypothetical protein OS493_007064 [Desmophyllum pertusum]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene12944.t1

ATGTGGTATAAAGGATCAAGAAATGGAACAAATGCCACTCGACTAGCCAATCAAGAATTTCAGAGAGTTGGAAAGAAACCTGGACAAAGGGTGCGAAAAAGAACAACAAAAGACAAGGAAAACAACAACCCCCCTTTGACGATGAAGATAACAAAGCAGAATGGAAAATACAGTGTCAAAAACTTGTCAGAAGAGAATGATGACAGCTTTGACTTAGTGTTTTTACAAGACCATTCCAGGGTAAAAGTCTGTACAGGGTGTAAAGCACTCTTTGCTCGTGATCAAAATGGAAGACCTTATCCTTCACCTCATGACCTGGCTGTTTGCCATAAGCTAGAGTTTTCTACAAATATTATGGACTGGAATTTGTTTTTTTCTGAATGTGGTGTGGCAGCTAGCAACATAGCTGCCTATACCAGGATTTTTGAAGAAAACAGTTTACAAGAAGAGCATCTCCCAGAAATTACCAAGACCATTTTGCAAGAAATAGGAATTAAAGCCATGGGCAACTTAATTAATATAATGAGACACATTAAAAAGCAGCCTGCAAATCCTGAAGACATGGCCGAACCAGTTAAGAAAACAAAGGCTGTACATGGAACTGGACAGTTAACCTTAACAGACAATATGGGCCAGTTGGGACCAGAAATGAAGGTTTCTCTACATGTCGAAGAAAAGGTTTATGTAGAGGTACATGTAGATACAGAGAAAATCAAGGATGGTTCTAGAATATATGGAAAAACCGATTCGAGTCTAACCAATTACCAACGAAAAGAAAAGCCGCTCAAAACAATTTGGCACCATTGCAAACGAAGGCAAGGGCAGAAGTATTCACAAGCTGCGCAAGTGCTTGAACAAATCGGTGAAAAACGCAAAGAGAAACGAAAACTATCTGAAGAGCTATCACTACTTCAAGCCAAGGAAGCAAGATCAAAAGCTTATCACCTTGCAAAAAGCCCTAGCCAAAACAAACCTAAATATACTGGTAAAGCAGAAGGGACAAAGAAAAAAGACATTTTAGCATTTTTCTCTCAGCCTGCCAAAGAAGCTGCTGTTGTTGTTGTGAATGAAACTGGAAGTCCAGAGCCTAGTAAAGATGCACCCTCCTCAAATTCTGTTATGAATATCGATGGATCAGCTGCTACTAGCTGTAAAGATAATTCAGCAAATGTCTGCAATGAAGGAAATGCTCAGGATAACCATTTTTTAGTCAATCAAGCTCCTTGTCATCAAAGCCTTTTTGATGCTAAGTATCAATCTGATAAAGCTATCAGAAGACTGTTGCAGCTGCCAGTTGCAATATTTCAAATGCACCTTATTGGACCAGGTTCCCAAAGACTGTATGTCACTGAACTGAAACCAGGTGTCAATATGGTGGTATTTATAAAGGCAATTGAGCATTTTCTAGTTTCACAGAACATTTCAAAGGAGTCAAGGCCTGAAATCCATTTACCAAGGGAAAGTTTGTCGTTACTTTGCAAACTTGCATCAACAGAAAGTGACCGTTTGTTAATTAAGTATGCAGCCTGCAAGAGCCAGGGCCTTAGCTCAAAAGCAGCAATAAAGATGTATGGTTTTAATAACTTCCACGAACAGGAGGAGAACATAATGAATGCAATTTCAATGGCAGAGTCCATCAGGAAAGGAATCTATGAACTTGTTAAGGTAGAGAATACAGCTTCATTGCGAGCACTTGGTATCCCTATCCCTGTTGAATCGGAATCAGATGACTCCGAGCAAAGTGATGACTCTGAAGTGTTTGCCACAAATGACACAAATTCCATCAATCATACAGAATCCACAGATGGCAATGATTTTCTGGAATACAATGATCCAGATATCATGAACCCTCCAGCATCGATGGATCCAGATATCATGAACCCTCCAGCATCGATGGATCCAGGTAACATGAACCCTCTAGCATCGATGGATCCAGATATCATGAACCCTCCAGCATCGATGGATCCAGATATCATGAACCCTCCCGCATCGATGGATCAGATATCATGA

Transcript

gene12944.t1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000232 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18017 all species →	SAM_4	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR039161 all species →	Family	Uncharacterized protein C19orf47-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21359 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04469	NFKB2; nuclear factor of kappa light polypeptide gene enhancer in B-cells 2	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.