Gene detail

Detailed information of gene12946.t1 in Actinoscyphia liui

Genomic Location: chr3:58405097...58418717
NR annotation: XP_020895815.1, uncharacterized protein LOC110234765 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene12946.t1

ATGGCGGCGTCGAGAGGGAAATATCAAGGCTATCCCTTTTGGCAGTGGAAGAGCTCGGGGAAGCGAAAGAAGTCTAAAAATGACACGCAAGAGAACGTCAACATCGAAGGGAGTTCACAGTCTGCAAAGATTTGGAAAGAACCGGTCAATGATGGCGTGGCGCTATCTGCTCAGCAAGAATATGTTCTGAATTTGGTTCGTCAAGGCAAGAATGTCTTCTACACTGGTAATGCTGGTACAGGAAAGACCACACTTTTAGGAAAGATACGGAAATGTGCTCCTGGCGGTACTTTTGTCACAGCACTGACAGGTGTTGCTGCTGTACAAGCTGGAGGTACTACTCTTCACTCCTTTGCTGGTATTGGACTGGGTAATGGTTCTAAGGAATACCTTTGTAATATTGTGCAAAGGGGCACCAAAGCCAAAAACTGGAAAAAAGCCAAAGTACTTATTATTGATGAGATTTCAATGTTGGATGGAAGGCTCTTTGATAAACTAGAATATATTGCACGCAAAGTTAGAAACAATGAGCTGCCATTTGGTGGGGTACAGTTAGTTGTATGTGGGGATTTCTTTCAGCTTCCTCCCATTCCAAAAGTAGGAGAAACAATTAATTACTGTTTTCAGAGTACAGCGTGGAACAAGTGTATTGATCACAGTCTAGAACTGACACAGATATACAGACAGTCTGATCCCAAGCTTATCAAGTTACTAAATGAAGTGAGGTACCAGTGTTTATCTGATGAGTCATTGCAGTTACTAACATACCTAAACAGACCTCTTCCAAACACTAGTGATATAGAACCAACTAAGTTGTATTCACACAATACTCGTGTGAATGACATCAATAATGCTAAGCTGTTGTGTCTACCTGGGGAAGAGATGACATACACAGCTGAAGACCAAGGCCGGTCGCCGTACGTAGAAAACATGAGTAAATATGTCATAGCCATGGACAAACTTGTATTGAAGATAGGATCCCAAGTAATGTTGCTGAAAAACCTGACAGAAGTGCTTATCAATGGATCTAGAGGAGTAGTAGAGGAATTTAATGAGGATGGGTGGCCTCGTGTCAAATTTGTGGAGGGTGGGCTGAGGACAATCAAAGAAGAGGATTGGAGTCTAGAGAATAGCAGTGGAACTGTGCTTGCTGTCCGTACCCAAATTCCTCTTAAACTAGCATGGGCAATTACCATCCATAAAAGCCAGGGAATGAGCATTGACTTTCTACAGGTTGATGTAAAGAATGTTTTCTCTCAAGGCCAGGGTTATGTAGCTTTGTCTCGAGCAAGAACACTAGAAGGTTTGCAAGTGTTGTCATTTGATGAGACTAAATTCACCACAAGTGATGCAGTAATAAGATTTTACAAAGATAAAGTCAAAGAAGCACCCATTCCTACTGACTGCAAGTTGTCCCAAGACATAAACCACACATCTTCATTGACTCCATCAGAACATGTTACACAAGAATCAGTGGACAAACAGATGCAGTCATCATGTCAAAACCTTCCAGTATGGTTGACAAGATTGGTTGGCAAGAATGCAAACAACATGAGACAGGATGGTGCTATGAACCAATTGGGAAGTTCACAAGTACTCCAGACTTCCTTGTCGATCACAAATGCATCCCAATCCAAAGGGTTCCAAAAGGCATCAGTTGTTTACCAATGGGATGAATCTAATCAAAACTACACTGAAAAGCTCTCAGATTCTAAATGCCTGAAGGCAATTCTAGATAATGACAATCACAAGTTTTTAAATAATGCTCACCTCTCTGTCTGTTCAAGTACTGCTACAACAAGTCAGTTGGACAAAACTGAAGACATGTTTGCTGACAATTTCTTTGATGATGATATTTCTGACTTGGAGTGCTTGAGAGCCTCTGATGACTTGTGTGATTCTGAATGTTTGAAAGCAAGCCAAAGTTGTGTCACTGGCAAAAAAGACTCTGCTGTGTCTTTGAAAGCAAGTCATGAGAAAGAAAGTGAATGTTTTTGGAATTTACATGAAGATCCTCCCGATTTGAAATCCTTAAAAACAGAAGGTCATTCAAGTGAAAACATAAATGAGAATGTTTCCACAGTTCAACAAGGAACTCCATTAGCAGTCAAGAGAAAACGATCCACATTAACACCATCTTCCATCATAGAAAAAGACTGCCAGCCTTACAACACCACACCTACAAACCCTCCACTGCATAAATCTCTTGGAATGACATATTTGAATAAGAGTGACAGTTCAAGAAAATGCACAAAAGAACGTCTAAAACAAAGAAGCAAAGAAAAGAATCCTTTTTGA

Transcript

gene12946.t1

ATAATACGTAGTGTTTTTCGAGTGTTTTCTTATTATCAAACGTTGAAAACAAAACAACTAAAGAATTTATATTATTGTTGATAGAATATCAACTTTAAATTTGTAAAAGAAAACGCCCCACAGAAATTTCTTTACAAATCCCTATAAATGCTCGGGGGGCATGGGCGCATTGAAATAACTGCATTGAAATAACATTGAAATGGTTGCGAATCAAATACATTTTGAGAAAAGGGTCACATTATATCTATGAGTTTGGTCGGATTGTGAAGGAACATATTTGGCTCTTGGTTATTTAATATTTTCCCGTTTTTCCCGTCCGGCCCTCTCACTCATATTTTTTCTTCGTTCCTTCCGAGTCTTTGGTCGCGTATTGGGATTCCTGTGGTATGTTGAGCGGGAAAACAAATCGCAGCCATACCAGTGAACTAATGCCATCCGTACTTGCGTCGTTATGCGAATTCACTCTTAGTAGCTTTTTTTTGTTGTGCAAACACAAGCCGGTAGAGTCTTAAATGAGTTTTATGCTACATTATAGCGTTGAATATCGTGATATTTCTCTGTAAGATAAACCGATATCGTTGATCCAACATGGCGGCGTCGAGAGGGAAATATCAAGGCTATCCCTTTTGGCAGTGGAAGAGCTCGGGGAAGCGAAAGAAGTCTAAAAATGACACGCAAGAGAACGTCAACATCGAAGGGAGTTCACAGTCTGCAAAGATTTGGAAAGAACCGGTCAATGATGGCGTGGCGCTATCTGCTCAGCAAGAATATGTTCTGAATTTGGTTCGTCAAGGCAAGAATGTCTTCTACACTGGTAATGCTGGTACAGGAAAGACCACACTTTTAGGAAAGATACGGAAATGTGCTCCTGGCGGTACTTTTGTCACAGCACTGACAGGTGTTGCTGCTGTACAAGCTGGAGGTACTACTCTTCACTCCTTTGCTGGTATTGGACTGGGTAATGGTTCTAAGGAATACCTTTGTAATATTGTGCAAAGGGGCACCAAAGCCAAAAACTGGAAAAAAGCCAAAGTACTTATTATTGATGAGATTTCAATGTTGGATGGAAGGCTCTTTGATAAACTAGAATATATTGCACGCAAAGTTAGAAACAATGAGCTGCCATTTGGTGGGGTACAGTTAGTTGTATGTGGGGATTTCTTTCAGCTTCCTCCCATTCCAAAAGTAGGAGAAACAATTAATTACTGTTTTCAGAGTACAGCGTGGAACAAGTGTATTGATCACAGTCTAGAACTGACACAGATATACAGACAGTCTGATCCCAAGCTTATCAAGTTACTAAATGAAGTGAGGTACCAGTGTTTATCTGATGAGTCATTGCAGTTACTAACATACCTAAACAGACCTCTTCCAAACACTAGTGATATAGAACCAACTAAGTTGTATTCACACAATACTCGTGTGAATGACATCAATAATGCTAAGCTGTTGTGTCTACCTGGGGAAGAGATGACATACACAGCTGAAGACCAAGGCCGGTCGCCGTACGTAGAAAACATGAGTAAATATGTCATAGCCATGGACAAACTTGTATTGAAGATAGGATCCCAAGTAATGTTGCTGAAAAACCTGACAGAAGTGCTTATCAATGGATCTAGAGGAGTAGTAGAGGAATTTAATGAGGATGGGTGGCCTCGTGTCAAATTTGTGGAGGGTGGGCTGAGGACAATCAAAGAAGAGGATTGGAGTCTAGAGAATAGCAGTGGAACTGTGCTTGCTGTCCGTACCCAAATTCCTCTTAAACTAGCATGGGCAATTACCATCCATAAAAGCCAGGGAATGAGCATTGACTTTCTACAGGTTGATGTAAAGAATGTTTTCTCTCAAGGCCAGGGTTATGTAGCTTTGTCTCGAGCAAGAACACTAGAAGGTTTGCAAGTGTTGTCATTTGATGAGACTAAATTCACCACAAGTGATGCAGTAATAAGATTTTACAAAGATAAAGTCAAAGAAGCACCCATTCCTACTGACTGCAAGTTGTCCCAAGACATAAACCACACATCTTCATTGACTCCATCAGAACATGTTACACAAGAATCAGTGGACAAACAGATGCAGTCATCATGTCAAAACCTTCCAGTATGGTTGACAAGATTGGTTGGCAAGAATGCAAACAACATGAGACAGGATGGTGCTATGAACCAATTGGGAAGTTCACAAGTACTCCAGACTTCCTTGTCGATCACAAATGCATCCCAATCCAAAGGGTTCCAAAAGGCATCAGTTGTTTACCAATGGGATGAATCTAATCAAAACTACACTGAAAAGCTCTCAGATTCTAAATGCCTGAAGGCAATTCTAGATAATGACAATCACAAGTTTTTAAATAATGCTCACCTCTCTGTCTGTTCAAGTACTGCTACAACAAGTCAGTTGGACAAAACTGAAGACATGTTTGCTGACAATTTCTTTGATGATGATATTTCTGACTTGGAGTGCTTGAGAGCCTCTGATGACTTGTGTGATTCTGAATGTTTGAAAGCAAGCCAAAGTTGTGTCACTGGCAAAAAAGACTCTGCTGTGTCTTTGAAAGCAAGTCATGAGAAAGAAAGTGAATGTTTTTGGAATTTACATGAAGATCCTCCCGATTTGAAATCCTTAAAAACAGAAGGTCATTCAAGTGAAAACATAAATGAGAATGTTTCCACAGTTCAACAAGGAACTCCATTAGCAGTCAAGAGAAAACGATCCACATTAACACCATCTTCCATCATAGAAAAAGACTGCCAGCCTTACAACACCACACCTACAAACCCTCCACTGCATAAATCTCTTGGAATGACATATTTGAATAAGAGTGACAGTTCAAGAAAATGCACAAAAGAACGTCTAAAACAAAGAAGCAAAGAAAAGAATCCTTTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZV90	ATP-dependent DNA helicase PIF1 OS=Danio rerio OX=7955 GN=pif1 PE=2 SV=1
Q0R4F1	ATP-dependent DNA helicase PIF1 OS=Xenopus laevis OX=8355 GN=pif1 PE=2 SV=1
Q1HG60	ATP-dependent DNA helicase PIF1 OS=Rattus norvegicus OX=10116 GN=Pif1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001024 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05970 all species →	PIF1	PIF1-like helicase	Family	Interproscan
PF21530 all species →	Pif1_2B_dom	DNA helicase Pif1, 2B domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051055 all species →	Family	PIF1 DNA helicase	Interproscan
IPR010285 all species →	Family	DNA helicase Pif1-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049163 all species →	Domain	DNA helicase Pif1-like, 2B domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47642 all species →	ATP-DEPENDENT DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15255	PIF1; ATP-dependent DNA helicase PIF1	EC:5.6.2.3	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.