Gene detail

Detailed information of gene12958.t2 in Actinoscyphia liui

Genomic Location: chr3:58604626...58620752
NR annotation: KXJ23863.1, Tyrosine-protein phosphatase non-receptor type 14 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene12958.t2

ATGCCGTTAGGATTCCTCTGTTCGACTGGATCCAAAAACGATGACGAGGCTGGAATCTGCCGCACACATGTCGAACTGTTGGACAACACTGTGCTCCACTTACATTTAGCTAAAACTACCACAGGAGCTGGTTGTTTGGAAATCGTCAGTGACAAGCTAGGTCTGTCTGAGATAACATACTTTGGACTCCAGTATGTCAACAAAAAAGGTTCAGAATGGTGGCTAGAGCTAGACAAACCAGTCAGTAAACAGTTACAAAGACATGGCAGTGGTTATACTGATGCAACGCTAAAGTTCCAGGTTCATTTCTTTGTCTCAGATGTGTTTTATTTGCAAGAAGAGTTTACTAGGCATCTTTATTATCTTCAACTAAAGTCCAATGTTCTTCAAAGTAGACTTTCTTGTACTGAAGAGGCTGCAATTGTTTTAGCATCCTATCTAGCCCAAGCTGAACTTGGTGATTATATCAATGACTCTTCATTTGAAGAGCTAAGAAATTATAATTTATTGCCAGAGAATCTGATGCTTACACAGTCTAGAGATGAAGTATACTTACAGATATTTGATTTGTACAAATCCCACAGTGGCCTTACTAAATTTGAAGCAGAGATGGAGTTTGTTAAATTAACACAACAACTTGAGGGTTACGGTGATGAGTACTACCCAGCCAAGGACAAGGAAGGATTATTGATACTAATTGGTGCAACATTTCGTGGTATAATCATCAGGCATTCACATGGACTTCCTCCAGTGTGTTTCAAATGGCCAGATATCATACGCATTACATACTCCAAAAGATACTTTTGCATTGAAACTACAAAGACACCGGACACCATACAGTTTGCAATGGATGATAGTGCAACTGCAAAATATGTTTGGAAAATGTTTGTTGGACATCATCGTTTTCGTCGTTTGAATGTAACACAAACCCCTCGTGACTTTGACAAGATCAGATCATCCAGAAAGATGAATCAGGAGAGAAAGGTGACTCTAAACAGTGCTAATTCAACAGAGAATGTGGTGGTTGCAAGCAATGAGATGTTAGATGCCAGCCCTTTAAGCAGTGATAGTACTACTGATGTACGTGTAGAAAGTAGCAACGACTTGAACGCAGCTTATACACCAGAGAGTGGAATAATCAACCCGTTATTTGACGACATTGATGATGCCAATGATGGTATGATGTTTAACATGGAAGAGGAAGTAGTTTTACGAACTTCTCCTCAAACAACTCACAAACCAACTAGACCTGTCTCGTCCATTCTACCTGATGCCACGCCTAAAGAGACCCCTCCCCTTGATATTGACTTTGATAGGCCAAAGTCGGTGGATTTATCAGCAATGAACATCCCTGACACTTCAATCAAAGGTTGTGGTGGGTCAGTGGAGCACGGCTCGTCCCTCGGTATTGGAAGTTCACTGTCTGTTGACTCGGGACATCCTCCAACGTACAGTAGTTCGTGCGAGTTTTTTAATTACGGGCAGTCGTTGGATAGCTTAGTGGAAAGTGATGGGACGAATGAGATAATGGAAGAGAAGACGGCTGACCGCACCCACCGTGCTGCATCTAGTATTGGATTTGTAGAAAATCACAACATCGAGAAGCCAGCACGCCCCACATCGCTAAACCTAGAAGGGATAAATGATGGATGGGGAGCTATCATGACGACAAGACGAACTAGTGATTACAGTTCTTCTGGTGATTCTGATTTCTCAGAAGATCACTGGCAGCGTGATGATGATGATCAACAGCTATCTAGAAACAAACAGCTGCAAGAGCTAGAAAAAAGTCTTAGTGATGGCCAGGTTTATAGTGAATTCCAAAAACTAAGAAGAACTAGTGAGAACTTTTCTGTAGCAACTGGTAGTCTTCCTCAGAATGCAACGAAAAATCGTTATCAAGATATTCTGCCTTATGAGGAAAATAGAGTTCATCTGAGTCCACGTAATAACCCAGCAAACAATGATTATATCAATGCAAGTAACGTAAAGATAAAGATTGGTCGTAGTTTGTACAAGTACATCACTGCTCAAGGACCTACAACTGAAACTGTACAAGATTTCTGGCAAATGATCTGGGAACAGAATGTTCAATTAGTTGTCATGGCAACAGAGGAGAAAATCACTCGTGAAACCAACTGCATGCAATACTGGCCTGACGAAATCGGTCGTGAACAAAGCTATGGCCACATTGAAGTTAAAACAGAAGATGTGCGAGACTGTTCACCATACAAAACTCGACGTTTGAAACTTAAACACATCCCTACCAAGAAAGAACGAATTTTATATCATTTGCAGTTCACTGACTGGCCTGATCATAAAATACCTGATGACCCTACTAACTTCTTAGAATTCCTAGATCAGATGGAATCTGTACGACAGCTGACAAACAGTGGCTTTGCACAAGGCGAGGATAAGCCTCCAGTAGTTGTACATTGTACGGCAGGTGTTGGGAGGACTGGAGTTATAATCTTAACAGATCTCATGATAGCATGCATACAGAACAATCAACGTATAAACATCCACAAGACACTTGTTCATATTCGACGTCAGCGAATGAAGTTCAAGTATAGCCCGGACATGTGTGTTCTGCGTCCATGA

Transcript

gene12958.t2

GCAACTCAACACAACCATGGATTTACGACATCATCAAATATTCACAGCCTACAATACGGAATGAAAACCATATTTCTACCATTACGGCTCCAAGCCTAGCACATCAGACTGAGCGATGCCGTTAGGATTCCTCTGTTCGACTGGATCCAAAAACGATGACGAGGCTGGAATCTGCCGCACACATGTCGAACTGTTGGACAACACTGTGCTCCACTTACATTTAGCTAAAACTACCACAGGAGCTGGTTGTTTGGAAATCGTCAGTGACAAGCTAGGTCTGTCTGAGATAACATACTTTGGACTCCAGTATGTCAACAAAAAAGGTTCAGAATGGTGGCTAGAGCTAGACAAACCAGTCAGTAAACAGTTACAAAGACATGGCAGTGGTTATACTGATGCAACGCTAAAGTTCCAGGTTCATTTCTTTGTCTCAGATGTGTTTTATTTGCAAGAAGAGTTTACTAGGCATCTTTATTATCTTCAACTAAAGTCCAATGTTCTTCAAAGTAGACTTTCTTGTACTGAAGAGGCTGCAATTGTTTTAGCATCCTATCTAGCCCAAGCTGAACTTGGTGATTATATCAATGACTCTTCATTTGAAGAGCTAAGAAATTATAATTTATTGCCAGAGAATCTGATGCTTACACAGTCTAGAGATGAAGTATACTTACAGATATTTGATTTGTACAAATCCCACAGTGGCCTTACTAAATTTGAAGCAGAGATGGAGTTTGTTAAATTAACACAACAACTTGAGGGTTACGGTGATGAGTACTACCCAGCCAAGGACAAGGAAGGATTATTGATACTAATTGGTGCAACATTTCGTGGTATAATCATCAGGCATTCACATGGACTTCCTCCAGTGTGTTTCAAATGGCCAGATATCATACGCATTACATACTCCAAAAGATACTTTTGCATTGAAACTACAAAGACACCGGACACCATACAGTTTGCAATGGATGATAGTGCAACTGCAAAATATGTTTGGAAAATGTTTGTTGGACATCATCGTTTTCGTCGTTTGAATGTAACACAAACCCCTCGTGACTTTGACAAGATCAGATCATCCAGAAAGATGAATCAGGAGAGAAAGGTGACTCTAAACAGTGCTAATTCAACAGAGAATGTGGTGGTTGCAAGCAATGAGATGTTAGATGCCAGCCCTTTAAGCAGTGATAGTACTACTGATGTACGTGTAGAAAGTAGCAACGACTTGAACGCAGCTTATACACCAGAGAGTGGAATAATCAACCCGTTATTTGACGACATTGATGATGCCAATGATGGTATGATGTTTAACATGGAAGAGGAAGTAGTTTTACGAACTTCTCCTCAAACAACTCACAAACCAACTAGACCTGTCTCGTCCATTCTACCTGATGCCACGCCTAAAGAGACCCCTCCCCTTGATATTGACTTTGATAGGCCAAAGTCGGTGGATTTATCAGCAATGAACATCCCTGACACTTCAATCAAAGGTTGTGGTGGGTCAGTGGAGCACGGCTCGTCCCTCGGTATTGGAAGTTCACTGTCTGTTGACTCGGGACATCCTCCAACGTACAGTAGTTCGTGCGAGTTTTTTAATTACGGGCAGTCGTTGGATAGCTTAGTGGAAAGTGATGGGACGAATGAGATAATGGAAGAGAAGACGGCTGACCGCACCCACCGTGCTGCATCTAGTATTGGATTTGTAGAAAATCACAACATCGAGAAGCCAGCACGCCCCACATCGCTAAACCTAGAAGGGATAAATGATGGATGGGGAGCTATCATGACGACAAGACGAACTAGTGATTACAGTTCTTCTGGTGATTCTGATTTCTCAGAAGATCACTGGCAGCGTGATGATGATGATCAACAGCTATCTAGAAACAAACAGCTGCAAGAGCTAGAAAAAAGTCTTAGTGATGGCCAGGTTTATAGTGAATTCCAAAAACTAAGAAGAACTAGTGAGAACTTTTCTGTAGCAACTGGTAGTCTTCCTCAGAATGCAACGAAAAATCGTTATCAAGATATTCTGCCTTATGAGGAAAATAGAGTTCATCTGAGTCCACGTAATAACCCAGCAAACAATGATTATATCAATGCAAGTAACGTAAAGATAAAGATTGGTCGTAGTTTGTACAAGTACATCACTGCTCAAGGACCTACAACTGAAACTGTACAAGATTTCTGGCAAATGATCTGGGAACAGAATGTTCAATTAGTTGTCATGGCAACAGAGGAGAAAATCACTCGTGAAACCAACTGCATGCAATACTGGCCTGACGAAATCGGTCGTGAACAAAGCTATGGCCACATTGAAGTTAAAACAGAAGATGTGCGAGACTGTTCACCATACAAAACTCGACGTTTGAAACTTAAACACATCCCTACCAAGAAAGAACGAATTTTATATCATTTGCAGTTCACTGACTGGCCTGATCATAAAATACCTGATGACCCTACTAACTTCTTAGAATTCCTAGATCAGATGGAATCTGTACGACAGCTGACAAACAGTGGCTTTGCACAAGGCGAGGATAAGCCTCCAGTAGTTGTACATTGTACGGCAGGTGTTGGGAGGACTGGAGTTATAATCTTAACAGATCTCATGATAGCATGCATACAGAACAATCAACGTATAAACATCCACAAGACACTTGTTCATATTCGACGTCAGCGAATGAAGTTCAAGTATAGCCCGGACATGTGTGTTCTGCGTCCATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WU22	Tyrosine-protein phosphatase non-receptor type 4 OS=Mus musculus OX=10090 GN=Ptpn4 PE=1 SV=2
P29074	Tyrosine-protein phosphatase non-receptor type 4 OS=Homo sapiens OX=9606 GN=PTPN4 PE=1 SV=1
P26045	Tyrosine-protein phosphatase non-receptor type 3 OS=Homo sapiens OX=9606 GN=PTPN3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005037 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09379 all species →	FERM_N	FERM N-terminal domain	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF09380 all species →	FERM_C	FERM C-terminal PH-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041782 all species →	Domain	PTPN14/21, FERM domain C-lobe	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR018979 all species →	Domain	FERM, N-terminal	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR018980 all species →	Domain	FERM, C-terminal PH-like domain	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45706 all species →	TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18025	PTPN14_21; tyrosine-protein phosphatase non-receptor type 14/21	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.