Gene detail

Detailed information of gene13204.t2 in Actinoscyphia liui

Genomic Location: chr3:63310483...63317365
NR annotation: XP_020895812.1, LOW QUALITY PROTEIN: polypeptide N-acetylgalactosaminyltransferase 1-like [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene13204.t2

ATGTCTTCTTCAAGAAATGCAAGGCAAAACAGGCTCCTAATCCAAGTATTCATTCTGACATCCGTCTTCTGGGTCTCTGTGGACTTTTTATTATTTTTAACGTTTTTAAATTCTCAGTATAGCTTCTTCGAATCAGAGAACATTGTTCCTAAAATACCTATTGAACTTGGAAGATCTGTAAAGTCTCGTCTCGAGGTTAATAATAAGAAGGACTTTAGAACTGGTCGCTATGAAGCGTTTGACGTAACGCCTGGTCTAGGAGAAATGGGAGAGGCGGCGTTTTTACCAGAGAATCTTAAAGCTGCGGCAGAAGAGGTTTTCAATAATCATTCATTTAATGTGATATTAAGCGACCATATTTCATTGGATAGGAAGCTCAAAGATGTCAGTGGACCCAAGTGCAAGACGAAACATGATTCATACCCCAAAAAGCTGCCAACGACCAGTGTGATAATCTGCTTTCATAACGAAGCGTTGAGTGTTCTACTTCGTACAGTGCATAGTGTTCTCAACCAATCCCCACCCCACCTCATCGCTGATATCATACTCATTGATGACTTCAGTGAATATGACAACCTACAACAGCCCTTAATGGAACACCTCTCGCAATTTGAAAAAGTCAAGGTAATACGCATGCCCAGCAGACAAGGTCTAGTCCCCGCGCGGTTAAAGGGAGCCGCGGTAGCCAAAGGCGAGGTACTGACGTTTCTTGATTCTCACTGCGAAGCGACGCCTGGATGGCTGGAGCCACTGTTGGCACGAATCGCTGAAGACAGACGAAACGTTGTGTGTCCTGTGATTGAAGTCATTGAACCTGATGATTTTAGCTACAAAACATCGGATGTGATCTACGAGAGGGGTGGGTTCACCTGGGACCTGTTCTTTACATGGAAGGCGATTCCTGAGTCTGAGAGACAGAGGCGCAAAGACGACTCGGACCCAATAAGATCTCCTACAATGGCTGGTGGACTGTTCTCTATGCACCGCCAGTATTTCTACGATCTTGGTACCTATGACGATAAGATGGAAATCTGGGGCGGTGAGAATCTGGAAATGTCATTCAGGATATGGATGTGTGGAGGCCAAATTGAGATCGTTCCATGCTCACGAGTTGGTCACGTGTTCCGTAAATATACATCACCGTATAACTTTCCAAAAGGAACGTCAGTAACTCTAGCCAAGAATTTTAACCGTCTGGCAGAAGTATGGATGGACGAGTACAAAGAACAGTATTACAGAAAGAAAACAGAAGAAGAAAGAAATGTGGACATTGGGGACATTAGTGACAGGGTTGCTCTCCGAGAGAGACTAGGGTGTAAGAGTTTTAAGTGGTATTTAGAGAATATTTTTCCAGATATGACGATGGTGGATCCCAATCCCCCTGCACAAGGGGAGATTCGAAATATTTACAACAATATGTGTGTTGATACTTTGGGAGAAAAAATTACGAAAATAGAAAAAGTTGGTTTATACATATGTCACGGAATGGGCGGTAACCAGTTTTTTACTTTGACCAAGACTAACGAGATAGTGTTTAGTGACGATAAATGTCTTGATGCACCGAAGAGTGAACCAGGGAGCACCGTGGAGATGATCTCATGTCACGGACTACGCGGAAACCAGGAGTGGAAACATGACAAGAAAACGGGAACCATATTTCACGTATGGACTGGGAACTGCCTGGATATATCTGGTGACCGGACATACCTCATAGTCAACCCGTGTGACGGCGCCAAAACACAGACATGGCGCTTTTCCCGTTACAAGAAAAAAACTACCAAGAAACCCGAGTATTTATAAAGCGAGTGAACAACAATTCCAGCCATGTGGGATATGCCTTTTAGTGAGCAGCCATCTTCGAGCCTACAGTACTAGTCATTATGCTCCGCTCCAGGCGGAAAACTAGAAATGCGCAGGCTCACAAGTAGCTCTCATTATATGTTTGTGAGAAATAGACTACAATGGCTTAAACTAATATCGATGAAATAGTTTTTTTTATAAATTGCAATAAATCTTACAACTAAAATGAATGTGTATTAAGTGATTTAATTTCGACATATCGTAACGAACAAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q10472	Polypeptide N-acetylgalactosaminyltransferase 1 OS=Homo sapiens OX=9606 GN=GALNT1 PE=1 SV=1
Q10473	Polypeptide N-acetylgalactosaminyltransferase 1 OS=Rattus norvegicus OX=10116 GN=Galnt1 PE=1 SV=1
O08912	Polypeptide N-acetylgalactosaminyltransferase 1 OS=Mus musculus OX=10090 GN=Galnt1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000328 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00652 all species →	Ricin_B_lectin	Ricin-type beta-trefoil lectin domain	Domain	Interproscan
PF00535 all species →	Glycos_transf_2	Glycosyl transferase family 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR045885 all species →	Domain	N-acetylgalactosaminyltransferase	Interproscan
IPR000772 all species →	Domain	Ricin B, lectin domain	Interproscan
IPR001173 all species →	Domain	Glycosyltransferase 2-like	Interproscan
IPR035992 all species →	Homologous_superfamily	Ricin B-like lectins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11675 all species →	N-ACETYLGALACTOSAMINYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004653 all species →	Molecular Function	polypeptide N-acetylgalactosaminyltransferase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006493 all species →	Biological Process	protein O-linked glycosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00710	GALNT; polypeptide N-acetylgalactosaminyltransferase	EC:2.4.1.41	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.