Gene detail

Detailed information of gene13311.t1 in Actinoscyphia liui

Genomic Location: chr3:65205330...65206796
NR annotation: XP_031550979.1, uncharacterized protein LOC116288350, partial [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000242 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05225 all species →	HTH_psq	helix-turn-helix, Psq domain	Domain	Interproscan
PF03184 all species →	DDE_1	DDE superfamily endonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007889 all species →	Domain	DNA binding HTH domain, Psq-type	Interproscan
IPR004875 all species →	Domain	DDE superfamily endonuclease domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR006600 all species →	Domain	HTH CenpB-type DNA-binding domain	Interproscan
IPR050863 all species →	Family	Centromere and Transposable Element-Derived Protein	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19303 all species →	TRANSPOSON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07497	K07497; putative transposase	-	Replication and repair	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.