Detailed information of gene13360.t1 in Actinoscyphia liui

Genomic Location: chr3:66112373...66133820
NR annotation: XP_020902667.1, WD repeat and HMG-box DNA-binding protein 1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O75717WD repeat and HMG-box DNA-binding protein 1 OS=Homo sapiens OX=9606 GN=WDHD1 PE=1 SV=1
O13046WD repeat and HMG-box DNA-binding protein 1 OS=Xenopus laevis OX=8355 GN=wdhd1 PE=1 SV=1
P59328WD repeat and HMG-box DNA-binding protein 1 OS=Mus musculus OX=10090 GN=Wdhd1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003464 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF12894
all species →		ANAPC4_WD40Anaphase-promoting complex subunit 4 WD40 domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR024977
all species →		DomainAnaphase-promoting complex subunit 4-like, WD40 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19932
all species →		WD REPEAT AND HMG-BOX DNA BINDING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000278
all species →		Biological Processmitotic cell cycleInterproscan
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0006261
all species →		Biological ProcessDNA-templated DNA replicationInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0043596
all species →		Cellular Componentnuclear replication forkInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene13360.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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