Gene detail

Detailed information of gene13409.t1 in Actinoscyphia liui

Genomic Location: chr3:67250139...67275864
NR annotation: XP_020902438.1, betaine--homocysteine S-methyltransferase 1-like [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene13409.t1

ATGAACATGTGCAGGTCATCATCTCCTTTATGGAAGATTATCTCGTCGTTCTACAAAATACGACCTGTCGAGCACGATGTGTGGTTGAGATTGAAATCACTTGGTATTGCAAGGACACACAGATGCCGTGGAACAAGGGGAGGAGTAAACATAAAGAGAAAGATCAACACAGTTCTTGGAATGGGTAGATACTGCACCAGTTTCGAGCATTGCCCTGCGATCTCTCATCACAATAACTGCTTCAACTTGGATTTCAAGGACGCCATTATGCAAATAGAGAACTTGAAATTGAAGTCATTAGACCATCGCATAACTTCATTACAGCCTTTTGTCCCATGTTCTTTGGAGTACAACAGCAAACAATCTTCAAAGGAAAGCTGGCCAAGGAATGTAAACAACTTGATTTATATTCCAGTAACTCGACTTCTACCGAAGTCTCAGCTTTTCACAAAGTTTGCTCTTCTAAATGCTAGATCAATCGTACGAAAGTCTACTCAAATCTGCGATCTTATCATCACTAACCGGTTGGACATATTAGCATTGACTGAAACCTGGCTTAATGGCACTGATCAGGATAACCATTGCATTGCTGATATTAACAATACACTTCCAAACTACACGATCCATCATGTACCAAGATCAAACCGTAAAGGTGGTGGTGTTGCTTTGATCATAAGAGACGGCTTTGATGTAAATAAAAACAATCAAATGGCTATCACATCCTTCGAATACCTTGACGTGACCGTGTCTTATAAAAATGCAGCGTTCAGGTTGGTAAACATATACCGGCCTCCTACATCTAATAATAAGAGTACGTTAAACTGTTTTCTATCTGAATTCTCAACGCTTGTCGAGGAACTCACAATATCAAGACAACCTATTGTTATTTCTGGCGATTTTAACTTTCACATGGATAATCCCACCAACAACGAAACATTGCATTTTACTAACCTTCTTGAATCTACGGACTTAATGCAAAATGTCAATGGTACTACTCATCGACATGGACACACCCTAGAGCTGATTCTCTCCCGCGAGGAAGATAACATCGTGTCTGAAGTCCGTATCTTATCTTCTGATGGAATCTCGGATCACAACCTGATTGCATGTAAATTGAATTGCTCTAAGCCTCCACTTTCAAAACTACTTGTCAAACACAGAGACACTAAGACCATGGATCTGGACAGTTTGAAAGCTGAAGTTGAGTCATCTTTGTCATCTATTGACTCACATGATAGTGCTACTGAATTAACAGCATACTACAATATCATCCTGTCGTCTCTTTTTAATCATTATGCACCTGAACGACAACGTACGCTGGTTCTCCAACTTCACCGAGACTTTCTTCGTGCTGGTGCTGACGTCATGCAGGCGTTTACCTTCTCCATGCAAGACGATCCAGTAGAGATCGATGGAAAACTGATATCCTGGGATGAAATCAACGGAGGGGCCTGTAAACTAGCCAAAGACGTGGCCAACACAGGTCCATATGCCATATCCTCGGGTTCCCTGTGTGAAACAGGCAAAGCATTCCAAAGTGGCAAAGTACCAAAAGATGAAATACAGCAAAAGTTTAAAAACCAAGTGGACATCTTTGTGAAAAACGATGTGGATTTTATATTAGCCGAGTACATTTCTCACGTCCAAGAAGCAGAGTGGATGGTTGAAGTCATGAAAAGCAGCGGGAAACCCACAGCTGTTACCATGGCAATCAGTGGTCTGGGTGACAGACATGGTATACCCCCAGGAGAATGTGCATTACGCCTTGTTAGAGCAGGTGCTGATATCATTGGGGTAAACTGTCGATTTGATCCTGAGATAAGCCTTCAAACTGTTCAGTTAATGCAAGATGCAGTCAAGAAAGAAGGGCTTAAAGTCCATTTCATGGTCCAGCCCGTGGGGTACTGGACACCAGATGCTGATGCTGCTGGTTTCGCAAGTCTGCCTGAATGTCCATTCGCTTTGGAACCTCGTGTGCTGACTCGATGGGACTGTCACAAGTTTGCTCGTAAAGCATATGACATGGGGATACGATACATTGGAGGATGTTGTGGATTTGAACCTTATCATATACGAGCCCTGGCTGAAGAGCTGTCACCAGAACGAGGCCGTTTACCTCTAGCAAGTACAAAACATTCCCCTTGGGGGGAGGCGCTAAAGTTTCATTCTAAGCCACACATGAGGGCTAAGGCAAACCGTGCATTCTGGGAAAATCTACAGCCATCGAGTGGTCGACCATTCTCGTCTGCGTTTGTGAGATCCAGTTGTAAATGGGAAAGTTAA

Transcript

gene13409.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RF32	S-methylmethionine--homocysteine S-methyltransferase BHMT2 OS=Pongo abelii OX=9601 GN=BHMT2 PE=2 SV=1
Q32LQ4	Betaine--homocysteine S-methyltransferase 1 OS=Danio rerio OX=7955 GN=bhmt PE=2 SV=1
Q5I597	Betaine--homocysteine S-methyltransferase 1 OS=Bos taurus OX=9913 GN=BHMT PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000016 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF02574 all species →	S-methyl_trans	Homocysteine S-methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR003726 all species →	Domain	Homocysteine-binding domain	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036589 all species →	Homologous_superfamily	Homocysteine-binding domain superfamily	Interproscan
IPR051524 all species →	Family	Betaine-homocysteine S-methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46120 all species →	BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0009086 all species →	Biological Process	methionine biosynthetic process	Interproscan
GO:0047150 all species →	Molecular Function	betaine-homocysteine S-methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene13409.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.