Gene detail

Detailed information of gene13521.t1 in Actinoscyphia liui

Genomic Location: chr3:69649377...69650588
NR annotation: XP_020905439.1, protein farnesyltransferase subunit beta [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q02293	Protein farnesyltransferase subunit beta OS=Rattus norvegicus OX=10116 GN=Fntb PE=1 SV=1
P49356	Protein farnesyltransferase subunit beta OS=Homo sapiens OX=9606 GN=FNTB PE=1 SV=1
Q8K2I1	Protein farnesyltransferase subunit beta OS=Mus musculus OX=10090 GN=Fntb PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006937 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00432 all species →	Prenyltrans	Prenyltransferase and squalene oxidase repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008930 all species →	Homologous_superfamily	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Interproscan
IPR026872 all species →	Family	Protein farnesyltransferase subunit beta	Interproscan
IPR045089 all species →	Family	Prenyltransferase subunit beta	Interproscan
IPR001330 all species →	Repeat	PFTB repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11774 all species →	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005965 all species →	Cellular Component	protein farnesyltransferase complex	Interproscan
GO:0018343 all species →	Biological Process	protein farnesylation	Interproscan
GO:0004660 all species →	Molecular Function	protein farnesyltransferase activity	Interproscan
GO:0008318 all species →	Molecular Function	protein prenyltransferase activity	Interproscan
GO:0018342 all species →	Biological Process	protein prenylation	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05954	FNTB; protein farnesyltransferase subunit beta	EC:2.5.1.58	Prenyltransferases	ko01006	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.