Gene detail

Detailed information of gene13722.t1 in Actinoscyphia liui

Genomic Location: chr4:1294101...1350464
NR annotation: XP_031553070.1, histone-lysine N-methyltransferase EHMT1-like isoform X5 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene13722.t1

ATGTTTGGAACTCAAGGAAAGTGGAACGTTTGGTTTCCATGTTCACGTTTTAAAAGAGTTTCGTGCTCACATTGTGACACATGGTTAAATGAACTACTACTACTACTACTACTACTGCTGCTGCTGCTGCTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTACTACTGCTACTACTGCTACTACTGCTACTACTGCTACTACTGCTACTACTGCTACTACTGCTACTACTGCTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTGCTGCTACTACTACTACTACTGCTGCTGCTGCTGCTGCTTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTGCTGCTGCTACTGCTGCTGCTGCTGCTGCTTACTACTACTACTACTACTATGTCATCATAACAATCTTCAGATAATCCAGGATGATTTTGTGGACTCACCAGGCATTCAAATAACTGAAGTCAAGACACTGGCTTCTTCAATAACAAAACCAAACATGCCAGCATTGGTTATTCCTGGGACAGCAGCACTGAGCCCAAGAAGCAACACACAAGTAGTGACACCTCCCATGACAGCAGATACTCATAGAGAAACAGACACACAGACTCCTCATGTAAGCCCAACATCACCAAGACAGACACTTCACCTAACCCCAACATCACCAAGACACAGAGCAAGACTTAGTGCAGACTTTAAGGCCAAGCTCAAACCGTCTAGCCCAGCAGTAAGGACACTTGACCTGACCATCACAAGCACTGTGTCTGATATCTCTAGTAATACAACTAGTATAGTTAGTACAGCAGCAAAGTTTACAACAAGTGACAGAAGAAAAGCTATTGAAAGGGCTGAAATATCAAGTGCTACGTCAGCTACGTCAGCTACATCAGAATCATCAACACATTCATCGTCATCATCAGCAAAATCTGAAGAATATGAACATGAAGGCGTAACAGACCCTGATGTTCTGTTGAAAATGTTAAAAGATATCAAAAGAGAAAGACCATTTAAAAAGCTGCGTGTCACACCAAGAAACCTTTATCAGGCTGTGAAAGCCAAAAACTTCAACAAAGTGCTTGCGCTAATAGTCGAAGGCTGTCAGCCTAATGAACAAGTTGAAGCAGAAAAGGGTAGAACAGCTTTGCATGCAGCTGCAGCAAGTGGTTGTCTAGACATCATTACTTGTTTGAAAATGGCTAATGCTGATCTTAACGTCTTGGACTACGACATGCGCACACCTATGTTTGATGCTGTTGAAAATGGAAGGCTGAAAACTGTACAATTTTTAATAGACTGTGGAGCCTCAATTCATGTCAAGGATCAAGGTGGCATGACTCTACTCCATGTTGCTGCTAGACGAGGCCACAATCACATAATAAATATGTTGCTGGACACAGCAAAGTTTGATGTCAACCAAAAGGACGATGGTGGCTGGACTGCTATCATGTGGGCTGCTGAAGACAAGATGGTTGAAACTGCCAAGCTACTTTTAGAAAGGCGTGGCAATGTTCATCTTAGAGATTTGGAACTCAACATTCCTCTTCATTGGGCTGCATTTGCTGGTAGTTACAACATGGCATTGCTACTACTTCAGAACCAATCAGATTTGTATTCAGTCAATAGACATGGTGAAACCCCACTACACGTCGCTGCTAGAGAAAACAACTTTTCATGTGTCCAACTGTTTATCAATAGGGGAGCTAGAATTGACCTGACAAACAATGAAGAACAAACACCATTAGACAAACTTTCATGTAAAAAAAGCAGCTCAAGAAAGAAAAGAAGAAATGAGACAAGAGAGATCAAGAGTATTACCAAAAGAACTGAGAAAAGAAAGTTGCTCAAGTCAAGAGAGCAGTCAAAGCAGCCAGCCACAAGAACCAGGACTAACGTTAAGGTAGTAGAGCGAAAAGAAAAGGTGAAAGAAAAAAGAGACCAGGCTCGAGCAGAACTGCAGAATAAGAGGGCGAAAATAAGAGAACAAACAAAGGAAAGAGTCCGTAAATATCGAGAGAGAAAGCTACAAGGAAAAGACCAACAAGAACAAGCCGCTGCATCGACTTCAAACGTGGGCGACGGGTTTCAAAACCGGACGACCTAA

Transcript

gene13722.t1

Protein

Uniprot

Uniprot term	Description
Q6RI86	Transient receptor potential cation channel subfamily A member 1 OS=Rattus norvegicus OX=10116 GN=Trpa1 PE=1 SV=2
O75762	Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens OX=9606 GN=TRPA1 PE=1 SV=3
Q8BLA8	Transient receptor potential cation channel subfamily A member 1 OS=Mus musculus OX=10090 GN=Trpa1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13637	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR043550	Family	Histone-lysine N-methyltransferase EHMT1/EHMT2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46307	G9A, ISOFORM B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0002039	Molecular Function	p53 binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006306	Biological Process	obsolete DNA methylation	Interproscan
GO:0016279	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0018027	Biological Process	peptidyl-lysine dimethylation	Interproscan
GO:0042054	Molecular Function	histone methyltransferase activity	Interproscan
GO:0046974	Molecular Function	histone H3K9 methyltransferase activity	Interproscan
GO:0051570	Biological Process	obsolete regulation of histone H3-K9 methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17458	PPP1R16A, MYPT3; protein phosphatase 1 regulatory subunit 16A	-	Protein phosphatases and associated proteins	ko01009	deepkoala