Gene detail

Detailed information of gene14011.t1 in Actinoscyphia liui

Genomic Location: chr4:6146231...6186610
NR annotation: XP_028516341.1, zinc metalloproteinase-disintegrin-like VMP-III [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene14011.t1

ATGTTTGCTCGTTACGTATGTCAATCTTTGAAACAAGAAAATGTCGGGGTAGCTGAAGACTATGTGATGAAGAGCCTAATTCAAAGTGAAGCCGTTGGCGATGGTACCTTGCAGTTTCGAGATACCGTAGGGTTTATTGAAGCCTACCAGCACCTACACAAACTTAGCAAAGACCCAGATGGTGGATTACTAGAAAACAATCTAATATGTGAAGTTCATAAGATACTCATGGATCATCGTAAAGAATCAAGCTACACAATAGGAGAATACAGCAGTCATGATCGAATGGTAGAATTTGAAGGAAACATACACTTTTATACAAAGTCTCCATATGTCGGAGAAGAAATGCAGAGATTGATTGACGAGTACAATAAAAGATGGACTGCCGTAAACTGTCTACGCTTGAATGATGAAGAAAATGCTTTGAAAGATTTAATTCACCTCTTGGCTTGGTTGGTGTACACCTTTTTAGAAATACACCCCTTTGCTGATGGAAATGGACGTACAATTCGATTGCTATACACGTATATCATGGAAGCCTATGGTTTTCCTTTTCCAGTCGTTATAGTTTGGTTGAGTGAAAACGAATTCAGTTCAAAAGACAGCGAAGAACTATATTGGAGTCAGGATTATGAGATAACGTATCCTGAGCGGCTGCATCACAGTCGAGAAAAGCGAGATCTATCAACAGCTACTGAGGACGGACACGAGAACACAGCAACATTTGCGTTGAAAGCATTTAACAACAAATGGGTTCTAGATGTAAACAAAAACCATCATTTATTCCCAGAAACAATCACGGTACGACAGTTTAAATCAGATGATTCTGAAGTCATGACCAGGGAAGTTCCAGAACATTGCCATTACCAAGGATCTATTCGTGGCAATCAAGACTCGACTGTTATTTTGAATACTTGCAGCGGTTTAACTGGAGTAATTGACGACGGGATAGATTCTTACCACATCGAGCCAAATGATGACTACCAGGAAACTGGTGCTCACAAGGTTTACTCCACCAACAATGAACCTGAATTTGACGTGCATCAAAACTGTGGAACACAGTCTGATGAGCACTCGCCTGATTCCACGCCTAAAGAATCTAAGATCACTCAAACAGTAAAGAGATTACGTCGTAGTTTGGTGGTGAACATTGAAGAGGTTTATCGACCGTACTTGACCATAGATGAAACCAGATACAACGAAGTTCTGTTTGTGGCTGATAATGGCATGGTCTATCAGAGAATAAATATACGAATAGTCATGTCAGCAATTGAGATTTGGACAAATGGGGATCGAATGAAGCGCCAAAAACAAGCTGGACCGGAACTGGGCACATTTAGTAAATACCGCAAAGCACAACTGAGAGGCAAGATTCACCACGATAACGCACAGTTCTTAAGTCACCATGGCTGGGGATTATATATTGGGATGGCATGGGTTGGAGGAATGTGTGGCTCCAATTCAGCAGCTGTTAACAAAAATGTACCCATACACAAAGAGGACTTCTTTACTACCCATCCCACTGTGACAATTATAAGATCTAAATTTGGTGATCCTAAATTTGACTTTGTCAATGTCACAGTCGACTCAGTCTACAAACTTCTTGCTACTCTGGACCCAAAGAAGTCTACTGGTCCTGATGGTCTATCTCCGAGATTACTAAAGCTTTCTTCATCAGCGATTGCCTACTCCCTTACTGCCATCTTAAATAAATCCATAGACGACGCTTGTTGGCCAACCGACTGGAAACAATCCAATATAACCCCCGTGTTCAAGAAGGACGATCGAACTGATAAATCCAACTATCGCCCGATATCCTTACTACCTACCATCTCAAAGATCGCTGAACGGGTTATTTACGACCAGGTTTATGAATGGATTAAAGACAAACTATGTAATACTCTCTCAGGGTTCTTAAAAGGACACTCTTGTTGTTCTGCCCTATTAAAAAGGACTGAGGATTGGCGCAGTGCTCTCGACCAAAGACAGTCCGTTGCGGCCATTACCATCGACCTTAGCAAAGCTTTTGACTCTATCTGCCATGGCCTGTTGATAGCCAAGCTGCGCGCTTATGGCCTTGGAAATAATTCTGTCAAACTAATCGAATCCTATCTTCATCACCGTCTTCAACGAGTCAAGATACGCGACATCACTTCTGACTGGAGAGTTGTCAAACATGGTGTTCCGCAAGGAAGCCTATTGGGTCCCATCCTGTTTAACATCTACATCAACGATATCAACTTCTTCTGTGATAATTGTTCTCGCAGGTTGTATGCTGACGACACTACTCTCTACTCCAGTAACACATCCGCCTTTGCCCTCGAACACAGTATTAACCAAGACCTTCATAAAATCACCAAATGGCTATCTTCTAATTTCCTTACTGCTAACCACACCAAGACTAAAGCTATCACCCTGGGCAACTCTGATCACTCCTTCACCTTTAAGCTGAAAAACAAAGTTATAGCTCTTAATGCCAGATGTGGTAATGGGATAAGAGAAGGGGACGAAGAATGTGACTGTGGTACACCAGAGTTTAAGAGACAGGGAAGTCTTTGCAGAGCTGTGATGACAGATTGTGACGTTCCTGAATACTGTACTGGAGTCTCACGAGATTGTCCAGGTGATGATGTAATGCAAGACAGCGTGCCATGCAACCAAACTAAAAAGATGTTGCTTGGAAACACAAATCGTAATAGTGTGGTCACCAGGACACTTTCTCCTCGCATCGAGACACGTTACATACGTATCAGTCCTCAGTACTGGCAGGGTTGGCCTTGCATGAGAACTGAACTTTATGGCTGTTCCTCTGACGAAGTTAATCCAGCATCTGCGACACCATTAAAGGCCTACAATGACTATTGCATTGTACCAACAAACAAATCATGCAAACTTCAAGAAAACAGCAGAATTGTCTTCAAAACCGGATATCAATGTAAAGAAAAGTACATGGAATTCAGGCTGGACGCCGATGGAATTCTGTGGCACCATTGTAGTGATAAACGAGTTTGTCCAGAAAATGGAAACACGGGAAACGGCGTAAGACTGGTAATCAACAGTGCTTGCAAAGATGAAGATTCTAAGTTTGTTCGAACATGGAGTAAGAATACTTCTTCTTTTGCTGTTCACTAA

Transcript

gene14011.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1
Q9R1V7	Disintegrin and metalloproteinase domain-containing protein 23 OS=Mus musculus OX=10090 GN=Adam23 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000540 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02661 all species →	Fic	Fic/DOC family	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01562 all species →	Pep_M12B_propep	Reprolysin family propeptide	Family	Interproscan
PF01421 all species →	Reprolysin	Reprolysin (M12B) family zinc metalloprotease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR003812 all species →	Domain	Fido domain	Interproscan
IPR036597 all species →	Homologous_superfamily	Fido-like domain superfamily	Interproscan
IPR036436 all species →	Homologous_superfamily	Disintegrin domain superfamily	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR002870 all species →	Domain	Peptidase M12B, propeptide	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001762 all species →	Domain	Disintegrin domain	Interproscan
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11905 all species →	ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002693 all species →	Biological Process	positive regulation of cellular extravasation	Interproscan
GO:0006954 all species →	Biological Process	inflammatory response	Interproscan
GO:0022407 all species →	Biological Process	regulation of cell-cell adhesion	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0051044 all species →	Biological Process	positive regulation of membrane protein ectodomain proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene14011.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.