Detailed information of gene14340.t2 in Actinoscyphia liui

Genomic Location: chr4:12536112...12550555
NR annotation: XP_020906776.1, guanine nucleotide exchange factor VAV2 isoform X2 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q45FX5Protein vav-1 OS=Caenorhabditis elegans OX=6239 GN=vav-1 PE=1 SV=1
P27870Proto-oncogene vav OS=Mus musculus OX=10090 GN=Vav1 PE=1 SV=1
P52735Guanine nucleotide exchange factor VAV2 OS=Homo sapiens OX=9606 GN=VAV2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002927 (this species only)
Ubiquitin familyUBD|Other|SH3 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00130
all species →		C1_1Phorbol esters/diacylglycerol binding domain (C1 domain)DomainInterproscan
PF00018
all species →		SH3_1SH3 domainDomainInterproscan
PF00017
all species →		SH2SH2 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000980
all species →		DomainSH2 domainInterproscan
IPR002219
all species →		DomainProtein kinase C-like, phorbol ester/diacylglycerol-binding domainInterproscan
IPR001452
all species →		DomainSH3 domainInterproscan
IPR036860
all species →		Homologous_superfamilySH2 domain superfamilyInterproscan
IPR036028
all species →		Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR046349
all species →		Homologous_superfamilyC1-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45818
all species →		PROTEIN VAVInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005085
all species →		Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0016477
all species →		Biological Processcell migrationInterproscan
GO:0043087
all species →		Biological Processregulation of GTPase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene14340.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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