Gene detail

Detailed information of gene14648.t2 in Actinoscyphia liui

Genomic Location: chr4:18725230...18746419
NR annotation: XP_028517583.1, CUB and sushi domain-containing protein 3 isoform X2 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene14648.t2

ATGTGTCATACAGTGACCTTGGTAATTGCAATCCTCCTATTCATCCTAAACGCTGTCCTGGCTCAGCACGATGGCTGTGGTGAGAGAATGTACCACCGTGCATTGATGATTGGAGGTCAATATTCTGAAAGAGGCATGTGGCCATGGCAGGTTGGAATCTACAAAAGGGCTTCAGATTGGAAATTTATCTGTGGCGGTGCCCTGGTAGCTCCACAGTGGGTGTTGACTTCTGCACACTGCTTTTACGAAGAAAGATGGAACTCAATTAAGACATGGTCAGAAAAAGACACACGACCGGTCAATAAATATAAAATCAGAGCTGGTGATCACGAACCTTTGAGCTATGAAGCAACTGAACAAGAACGTATTCCACAAGAAATACTTGTCTACCCAGGCTATAAACACGATCGCAACTATGAGAATGACATCGCTTTAATCAAGCTGAAGCGAAAATTCACCCTGAGTCGGTACGTGCGTACTGTATGTCTTCCTGACGCTAGTACCCAGGATCTCACAAAGCCGGGCGTTCTTGGTACCGTGGCTGGGTGGGGAACAACTGAGAGCAACCGACAGGCTTACTTTCTTCGCCATTCAACACATACAATCCTGAACAATGGCTTGTGCCACCGAGGGTCAAAATTTTTCTTCAATGAGACGGTGACGTTCTGTGCCCATGATACCAAAAGTGTGCCATGTAGAGGTGACAGCGGTGGTAGTATGGTGAGGAAGATGTTAGTAAATGGTCGACATCGATGGGTGACCATCGGTTTAGTCAGTTGGGGAGGATGTACTTTGAACAGCAATAAGTACAGCTACTACACAAGGCTGCAACCGTTTATTAGTTGGATACTGCATAAAACAAATTCAACATGTTTAGATCCTGGTCCACCTCGTGACGGTGTAAGGACACCTGGCAAAACATTCTACCAGCATAATGACGTGGTGACGTTTAGATGCAAGGCAAACTATACAAGAACAGGACGGTCTGTCGTGTCATGTCAACAAGATGGAACATGGAATGCATATAAACCACTGTGTTTAGCTTCGTGTAGAGATCCAGGTGTTCCTAGACATGGCGTTCGTTTAGATAATGACTTCAAACACGGACACACTGTTAGGTTTAGATGCAAACAAGGATACAAACTAACTGGCAAACCTTTTATCATTTGTAACGAAGGAAGATGGCATAACAGTATCCCAAACTGTTCTGCACCATGTTCAAATCCTGGGACACCATTCAACGGTAAGCGACTAGACCACTCCTTCCTTCACGGTGACAAAGTCAGGTTTTTATGCAACAAAATATGGAAGATGGACGGTGAACATACAATCACATGCAAAGATGGACGATGGGATCACAACGCACCAAAGTGTTTTTCGGCGGGAATTTGTGGTGATCCGGGAAGTCTTTCCAATGGTAGGAGAAGTGGTAGCGACTATTTTGAGGGTAGTGAAGTGACCTTCACATGTAGACGAGGCTATAAGTTGATAGGCCTACAAGCCATACGATGTTTAGTTACAGGACGGTGGAGTGGACCAGTACCTCAATGTAAAAGATTCCTAGAGGGCTGTACAGCGCCAAGATTGCCTGACAAAGGTGGTATATACTCTAAGAAGAACTTTTATGACCATAGAAAGAGATTAACGTTCTATTGTTATAGTGGTTATAAACTTGTTGGTGACCCGTCTGCATCGTGTCGTAATGGGAAATGGAACAACGACCCGCCATCTTGTAAACGAAAATGTGGTAATCCAGGAAGTCCCTCTAATGGCTGGAAGAACGGTGACGGCTATATCGAGGGCAAACAAGTGACCTTCACATGTAGACGAGGCTATAAGTTGATAGGCTTGCAAGCCATACGATGTCTACATACAGGACGGTGGAGTGGACCAGTGCCTCAATGTAATAGATTCCCAGAGGGCTGTACAGCGCCAAGATTGCCTGACAAAGGTGGTATATACTCTAAGAAGAACTTTTACGACCATAGAAAGAGATTAACTTTCTATTGTTATAGTGGTTATAAACTTGTTGGTGACCAGTCTACATCGTGTCGTAATGGGAAATGGAACAACGACCCGCCATCTTGTAAACGAAAGTGTGGTGATCCAGGAAGTCCCTCTAATGGCTGGAAAAACGGTGACGATTATATCGAGGGCAAACAAGTGACCTTCCTATGTAGACAAGGCTATGACGACTTGATAGGCCTACAAGCCATACGATGTTTAGATACAGGACGGTGGAGTGGACCAGTACCTCAATGTAATAAACGATGTTCTGTCTATCGTGTACAAAACGGTGTAATTACAGCTTCAAATGTTGTCCTTAGACAAGACACCGTAAAACACGGTACCAGAATAACTTACACCTGTAGAAGTGGATACACTCTTGAAGGAGCTAAAACAATTACTTGTGATCATGGTCTGTGGAGCAGCAGTACTCCTCAATGCAAAGCTTCATGTTCAGATCCTGGTTTTCCACACGGTTGTCACCGGATTCATCATTCGTTCCGTCATGGTGAATCAGTCACGTTTAGATTATCTAAAAGAGGATGGGCGATGATAGGTGAACCGATCATCAAATGTACTGATGGAAAATGGGATTACAATGCACCAAGATGTTTGGTTTTACGAGATGGAGAATTGGTGCCATGA

Transcript

gene14648.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4LDE5	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SVEP1 PE=1 SV=3
A2AVA0	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Mus musculus OX=10090 GN=Svep1 PE=1 SV=1
P0C6B8	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Svep1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000214 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR050350 all species →	Family	Complement & Cell Adhesion Regulators	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19325 all species →	COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene14648.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.