Gene detail

Detailed information of gene14761.t2 in Actinoscyphia liui

Genomic Location: chr4:20959128...20963131
NR annotation: XP_031557138.1, general transcription factor 3C polypeptide 5-like [Actinia tenebrosa]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y5Q8	General transcription factor 3C polypeptide 5 OS=Homo sapiens OX=9606 GN=GTF3C5 PE=1 SV=2
Q8R2T8	General transcription factor 3C polypeptide 5 OS=Mus musculus OX=10090 GN=Gtf3c5 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006262 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17682 all species →	Tau95_N	Tau95 Triple barrel domain	Domain	Interproscan
PF09734 all species →	Tau95	RNA polymerase III transcription factor (TF)IIIC subunit HTH domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042536 all species →	Homologous_superfamily	TFIIIC, subcomplex tauA subunit Sfc1, triple barrel domain superfamily	Interproscan
IPR041499 all species →	Domain	Transcription factor IIIC subunit Tfc1/Sfc1, triple barrel domain	Interproscan
IPR040454 all species →	Family	Transcription factor IIIC subunit Tfc1/Sfc1	Interproscan
IPR019136 all species →	Domain	Transcription factor IIIC subunit 5, HTH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13230 all species →	GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000127 all species →	Cellular Component	transcription factor TFIIIC complex	Interproscan
GO:0001002 all species →	Molecular Function	RNA polymerase III type 1 promoter sequence-specific DNA binding	Interproscan
GO:0001003 all species →	Molecular Function	RNA polymerase III type 2 promoter sequence-specific DNA binding	Interproscan
GO:0006384 all species →	Biological Process	transcription initiation at RNA polymerase III promoter	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15202	GTF3C5, TFC1; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.