Gene detail

Detailed information of gene14892.t1 in Actinoscyphia liui

Genomic Location: chr4:23512449...23528284
NR annotation: XP_020901124.1, neurogenic locus notch homolog protein 2 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene14892.t1

ATGGAACCTGTATTGACGGCATTAATGGATACACTTGCAAGTGTAACAATGGTTTTATTGGCAAACAATGTGAAGCAGTTGTCAACAAATGTCTGTACAACTTTTGTCAAAACCAAGCAACGTGTACAAGTTTCCAAAATGGAGGATATCAGTGTCTTTGTACACCAGGATTCACAGGACTCCACGAAGGAACATCCTGATCATCTAGCTGTAGAGCTCTACAAAGGATCCATTCGTTTGTCTCTAAACCTTGGCGTAAATACAGCAGTGGCTACAACCGATACAAAACTCAACGATGGTACATTTCACAAGCTGAAAGTCACCCTCTCGAACACTAAAGCGGAAGTGGCCGTGGAGTCTAGCGCATGCGTACGTGGGGTTTGTATGGCAACCGCTGTCGTACAAGCATCCAGTTCGTCGTCATTCCATGATATACCGACAATGGGGGGACTCAGACAGTTGACCCCCCTGATTCGTAGTCAGATCGCTGGCAATGGGAACTTTGTTGGCTGTATTGAGGACTTCCAAGTGAATGGTGTTACTGATATACTATCACATCTCATGCCAAATTCCCGTAACATTCACCCGGGCTGCCCAAGAACGGACGTCTGCAAAAACCACAAGTGTAAACACGGAGCATGCGTGGATCAGTGGTTTGACTACCGCTGTCAGTGTAAGACAGGGTACGAGGGCTCATATTGTGAGAAGCAACCGACTGCTACGTTTAATCAAGACTACAACAATGGATTGATGTTCCAGTCCCCCTCGGTCATTACGTCATTGTCGTTTGAGTTTTCTGCTGCGCCAGCACCGGACGGGGTTCTTGTATTCGCGGAAAAAGGATCAACGCCAGGCTCGTTTGGGTTGTCCTTGAGTAGAGGTCAAATCATAGCAGCGTATCACGTGGGCTTTATAAATCAAGTTTCTAAACGACTTGGAACGAATCTCGACGACGGAGACTGGCATCAAGTCCTTGTCAACGTCACTTCCGGTCACGTGACAGTCCGAGTTGATTCCGACGAAAAAACCTTGAAACTCCATTCCACTAGCATACCTCACCTGGACAGCAAGTTGTACATGGGTTCGCTACTCAGTACCGCTGACCTAACGACGCTGGGGTTAACCCTGGATGGGTCCAAGACATTTAGTGGCTGCGCACGCGCAGTGAGGATCAATGGGATGCTGAACACCTTTGAGCTCGCTAAGAGTTCTGGGACATACACTTTGCCAAGCGTGGGCTGCAAGAAGGAAGACAACTGCAAAGGAAATGTTTGTGGTAATGGAGGCACATGTGTTGCCACGTGGTCTGGCTTCGTTTGTAAATGTTTGGCAGATTTTAGCGGGAAAACGTGTCAGAATAGCACATCCATAACGTTTCGATCAAGGAGTAGCTACATCGAGGCTGTTCTCAATACCACTGACTGGCTGTTCGGCCAAAGTGGTTCACTGTGGTTTCAAACCATCCATTCCAGCGGTCTTCTTTTGTATGCTGGATGGCGGCCGGGAGGGACTAATACCGACTTCTTAATGATTGACATCACTTCCGGTCGCATTCGATTTACTGCTGACCTAGGCTCAGGGTCCACCGCTATTGTAATTAATCAACCAATCAGCGACGGTCTTTGGCACAATGTCACGTGGTCAAGGCAATATAAACATGTGCGCGTAAGCGTGGATGGTGCGCATGTCCAAGAGAGCGACATTCAAGGTAGTCAGAGTGTGCTGGACGTCGCCACAGGACAAAGTGTCTATGTGCATCTAGGGGGATTCCCTTATTCACAAGCGAAAGGCATGAAGACCACTGGCTCATTTCAAGGATTCCTCAAAGGAGTCAAATTCCACAATCGTTTTGTTCACATGCTGACACCTTCTTCCCAGAAAGGCCTTTCTGTGTCACATTCGCAAATCCAAATTGGTTACCATAGAAACTCTTCATGTGCGTCCAATCCTTGCCCTGGGAACAGCGCATGCGTAGACCAAGGTAGTTCATTTAATTGTACGTGTCTGCCACAGTGGACTGGTACCAACTGTACAGTTCGTATTCCTGACTGCAATTCGCATAACTGCAGCAATGGAGCTACTTGTGTCAATACTACTACTGGACACAACTGTGTCTGCCCGCAAGGATTTACTGGGAAGTATTGTACCGTTCTCATAAAACCTTGCGCATCGACACCTTGTAAGAATGGCGCCACGTGCTCTCAGTTGTCAAACATTGAGTACAAGTGCACGTGCGTGAATGATTTCATGGGGAAGAATTGTGAAACAAAGATGGATAACTGCACAAGTTCACCTTGTCACAATGGAGGAACTTGTGTGGATCTTGTTGAAGATTACAACTGCAGTTGTGTGGCTGGATACGAAGGAAAAGATTGCCAAGTTTTAAATCCTTGTTATGGCCATAACTGTCAGAATAATGGAGAATGTGTACGAGGGAAGGGCAACTATACCTGATCCTATAATTGCCAATGTCTACCCGGTTTTGCTGGCGATTATTGCGAGATTGAACTCAATGAATGCGACAGCAATCCCTGTTTGCATAATACCAAATGCATCGACAAAAACAATGGGTTTGATTGCATATGTGAGGGAACTGGTTTCCATGGCTACCGCTGCAGCAACAACGTCGACGAGTGCTCATCCGGGACTCATGAATGCAACAACGACTCTTCCTGTGAAGACACAAAGGGAGGCTACCGGTGCATCTGCGAGCAGGGATACAGCGGTCAATTCTGTGAGAATAAGACCATAATTGATGAGCCCACGGCAAATGCTCGTCAGCAGCAAACCGAGTCAAGAGACCTGGAATTGGGTTTATCGATTGCGTTTGTGTTGATAGTGCTACTGATCGTAGTCATTATCTTGTTTTTCTATTTTCGCAAACAAGCAGCCAAAATGGGTGGCAATTACTATCCGTCGGACGAGGAAACCAAGGGGGGTTTTGCGATGGGTCCATTAGACCTTCAGAAACTTGAAAAGAACGAAAAACTAGTGTAG

Transcript

gene14892.t1

ATGGAACCTGTATTGACGGCATTAATGGATACACTTGCAAGTGTAACAATGGTTTTATTGGCAAACAATGTGAAGCAGTTGTCAACAAATGTCTGTACAACTTTTGTCAAAACCAAGCAACGTGTACAAGTTTCCAAAATGGAGGATATCAGTGTCTTTGTACACCAGGATTCACAGGACTCCACGAAGGAACATCCTGATCATCTAGCTGTAGAGCTCTACAAAGGATCCATTCGTTTGTCTCTAAACCTTGGCGTAAATACAGCAGTGGCTACAACCGATACAAAACTCAACGATGGTACATTTCACAAGCTGAAAGTCACCCTCTCGAACACTAAAGCGGAAGTGGCCGTGGAGTCTAGCGCATGCGTACGTGGGGTTTGTATGGCAACCGCTGTCGTACAAGCATCCAGTTCGTCGTCATTCCATGATATACCGACAATGGGGGGACTCAGACAGTTGACCCCCCTGATTCGTAGTCAGATCGCTGGCAATGGGAACTTTGTTGGCTGTATTGAGGACTTCCAAGTGAATGGTGTTACTGATATACTATCACATCTCATGCCAAATTCCCGTAACATTCACCCGGGCTGCCCAAGAACGGACGTCTGCAAAAACCACAAGTGTAAACACGGAGCATGCGTGGATCAGTGGTTTGACTACCGCTGTCAGTGTAAGACAGGGTACGAGGGCTCATATTGTGAGAAGCAACCGACTGCTACGTTTAATCAAGACTACAACAATGGATTGATGTTCCAGTCCCCCTCGGTCATTACGTCATTGTCGTTTGAGTTTTCTGCTGCGCCAGCACCGGACGGGGTTCTTGTATTCGCGGAAAAAGGATCAACGCCAGGCTCGTTTGGGTTGTCCTTGAGTAGAGGTCAAATCATAGCAGCGTATCACGTGGGCTTTATAAATCAAGTTTCTAAACGACTTGGAACGAATCTCGACGACGGAGACTGGCATCAAGTCCTTGTCAACGTCACTTCCGGTCACGTGACAGTCCGAGTTGATTCCGACGAAAAAACCTTGAAACTCCATTCCACTAGCATACCTCACCTGGACAGCAAGTTGTACATGGGTTCGCTACTCAGTACCGCTGACCTAACGACGCTGGGGTTAACCCTGGATGGGTCCAAGACATTTAGTGGCTGCGCACGCGCAGTGAGGATCAATGGGATGCTGAACACCTTTGAGCTCGCTAAGAGTTCTGGGACATACACTTTGCCAAGCGTGGGCTGCAAGAAGGAAGACAACTGCAAAGGAAATGTTTGTGGTAATGGAGGCACATGTGTTGCCACGTGGTCTGGCTTCGTTTGTAAATGTTTGGCAGATTTTAGCGGGAAAACGTGTCAGAATAGCACATCCATAACGTTTCGATCAAGGAGTAGCTACATCGAGGCTGTTCTCAATACCACTGACTGGCTGTTCGGCCAAAGTGGTTCACTGTGGTTTCAAACCATCCATTCCAGCGGTCTTCTTTTGTATGCTGGATGGCGGCCGGGAGGGACTAATACCGACTTCTTAATGATTGACATCACTTCCGGTCGCATTCGATTTACTGCTGACCTAGGCTCAGGGTCCACCGCTATTGTAATTAATCAACCAATCAGCGACGGTCTTTGGCACAATGTCACGTGGTCAAGGCAATATAAACATGTGCGCGTAAGCGTGGATGGTGCGCATGTCCAAGAGAGCGACATTCAAGGTAGTCAGAGTGTGCTGGACGTCGCCACAGGACAAAGTGTCTATGTGCATCTAGGGGGATTCCCTTATTCACAAGCGAAAGGCATGAAGACCACTGGCTCATTTCAAGGATTCCTCAAAGGAGTCAAATTCCACAATCGTTTTGTTCACATGCTGACACCTTCTTCCCAGAAAGGCCTTTCTGTGTCACATTCGCAAATCCAAATTGGTTACCATAGAAACTCTTCATGTGCGTCCAATCCTTGCCCTGGGAACAGCGCATGCGTAGACCAAGGTAGTTCATTTAATTGTACGTGTCTGCCACAGTGGACTGGTACCAACTGTACAGTTCGTATTCCTGACTGCAATTCGCATAACTGCAGCAATGGAGCTACTTGTGTCAATACTACTACTGGACACAACTGTGTCTGCCCGCAAGGATTTACTGGGAAGTATTGTACCGTTCTCATAAAACCTTGCGCATCGACACCTTGTAAGAATGGCGCCACGTGCTCTCAGTTGTCAAACATTGAGTACAAGTGCACGTGCGTGAATGATTTCATGGGGAAGAATTGTGAAACAAAGATGGATAACTGCACAAGTTCACCTTGTCACAATGGAGGAACTTGTGTGGATCTTGTTGAAGATTACAACTGCAGTTGTGTGGCTGGATACGAAGGAAAAGATTGCCAAGTTTTAAATCCTTGTTATGGCCATAACTGTCAGAATAATGGAGAATGTGTACGAGGGAAGGGCAACTATACCTCGACGATTGCTCTCCCAACCCATGTAAGAATAGAGCTTCTTGTAAAGACAAGGTGTCTGGTTATGAATGTCAATGTCTTCCTGGATTTACTGGTCAGACGTGTTCAGTGAATATCGACGATTGCTCTCCCAACCTTTGTAAAAATGGAGCATCGTGCTTGGATAAGTTAGCCGGTTATTCGTGTACCTGTTTGACCGGATTTACAGGTTCCAATTGTGAGGTCAACATTAATGACTGTTCACCCAATCCTTGTGAACACGGTAGTAACTGTAGTGACCTGATTGCGAATTTTTCTTGCTCTTGTCAAAGTGGATTCCAAGGAAGACGCTGCGAAGAGGATGTCAATGAATGCTTAAAGAAACCTTGTGCGCATGGCACGTGCAACAATACAGTGGGCTCATTTTCGTGCGATTGTTCAAATACTGGGTACCAAGGCTTTTATTGTAGTGTTGATGTCATTGAATGCTCTTCCCTATCGACACCCTGTAAGAATGGGGCCACATGCCTTAATACACCAGGATCCTATAATTGCCAATGTCTACCCGGTTTTGCTGGCGATTATTGCGAGATTGAACTCAATGAATGCGACAGCAATCCCTGTTTGCATAATACCAAATGCATCGACAAAAACAATGGGTTTGATTGCATATGTGAGGGAACTGGTTTCCATGGCTACCGCTGCAGCAACAACGTCGACGAGTGCTCATCCGGGACTCATGAATGCAACAACGACTCTTCCTGTGAAGACACAAAGGGAGGCTACCGGTGCATCTGCGAGCAGGGATACAGCGGTCAATTCTGTGAGAATAAGACCATAATTGATGAGCCCACGGCAAATGCTCGTCAGCAGCAAACCGAGTCAAGAGACCTGGAATTGGGTTTATCGATTGCGTTTGTGTTGATAGTGCTACTGATCGTAGTCATTATCTTGTTTTTCTATTTTCGCAAACAAGCAGCCAAAATGGGTGGCAATTACTATCCGTCGGACGAGGAAACCAAGGGGGGTTTTGCGATGGGTCCATTAGACCTTCAGAAACTTGAAAAGAACGAAAAACTAGTGTAGATTTTTATTTTATTTCAGAATTATTTGAACAAATTTTTATAATATAGTTTGAATTGATTTGTAAGATCTTTGTAAATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P82279	Protein crumbs homolog 1 OS=Homo sapiens OX=9606 GN=CRB1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008627 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF02210 all species →	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001791 all species →	Domain	Laminin G domain	Interproscan
IPR051022 all species →	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049 all species →	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007157 all species →	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991 all species →	Cellular Component	protein-containing complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16681	CRB; protein crumbs	-	Hippo signaling pathway - fly	ko04391	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.