Gene detail

Detailed information of gene14919.t2 in Actinoscyphia liui

Genomic Location: chr4:23916874...23928872
NR annotation: XP_031561842.1, queuine tRNA-ribosyltransferase accessory subunit 2-like [Actinia tenebrosa]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene14919.t2

GTTTTGACTAATGGAGTTGAAATTGAATTGTAAGAGAGATTCATGTCGTTCAGGAGAACTGCTAATCGACCGTGCTCAATATGAAACTCCTATGTGTTTTATGTACACACGATCAGGCACAATACCTCACATCGCGATATGGCACGATCTACTCGAACACAACCTTCCAGTCGCCGTACAACTAACTTTACCAACTCTCGTTGATCAAGCGAGTACAGAATTAACAAAACAGCTCGAAAATGGCATTCATTCATTTATTGGTAGAAAGGTCATAAGCTTTCTCTCGATACAAGACCCTGCTGTTGAACCACCAGTTGGATATAATGAAGACAAAGCAGTATCAGTGTGGGCAGCTGGTGGCAGAAGAAAGATTGATGTCCAACAATTCATTTCAACCATGGAAGCATTCAGACCAAACATTGTTGAATGCCTTTGTGATACAATCCCTTCTAGTGGGCAATCACCTAAAAGAATCAAAAAGTCAGTTGACAGAACTTTAAAATTTCTGGATGAAATTATTGAGCACAATGAAGAGAATAAATGTCATATACTTGGTGCAATTGAGGGTTCTGATTCCATCAATGAAAGACTTAGATCAGCCAAGGAAACAGCAAAGCATCCAGTCTCAGGTTTCGTTCTGGAAGGGTTTAACGGCTGCTCTAATGACTGGGTGAACCTGTTGGCTAAAACAGTGTCTGAACTTCCTGAGAATAAACCCCGATTTATTCATGCCATATCCACACCAGATGACGTCATAAAAGCTGTTGAATGTGGCATCGATGTCTTTGATTCGAGTTTCCCTTATCAAGTTACCGAAAGAGGTTGTGCACTAATATTTCCATCACAAAACAAGAGGTTCAAACCAGACCTCAACTTTACAGCTAAAGACAACGATGCGAATACTAAAAGTAATGTAAGTGGTTCTCCACCAAAGGAGGAGGAAGACAAGGCCAGATCACGTGATGGAAGCGAGTACGAAATTGATCTAAATGACGTCAGGTTTAGTAATGACTTGAGCTCAGTAGACCACTGTGGGTGTTACTGCTGTACAAGTCATTCGCGGGCGTACATTCATCATCTTCTCGTTACTAAGGAGATGCTGGCAAAGGTGCTGCTCATGACCCACAATCTTCACCAATACTACAGATTCTTTGAAAATATCAGACAAGCCATTAACAACGATTGCTGGGAAAATTTTAAGGAACGTTTTCACGTCAGCTGGAACCGGTAAAATTCAACAAATTCAGAAAATGACAGTATCCGAAAGAAGTCTATTACACCCAAGGTTAATTGAATGTGCATATTGGGAAGCTGAAATCATGGGAGAGTTCTTAATCTACTTGGAACTTTTATTTCCAGTTTTATACCATTCTGTTACGTTCGCGCACGGAATGATGATTCAACAAATCAATGAAATTACTCTCGCCCTCACGTGACTCACGACGTAACTTCCGTCTCGCCAAAGGAATTCCAAACAAATGAACAAGTACATTACACAAATTTAATTTGCAGTAAGTTTGGTGAACACTGTGAACACTCAAAGCTTTATTTTAGATACAATACTGAATATAATAAATATTACAAAATCAAATAATAAAAACATCCGAGCTTGTTTATGTTTATACACTCTGGTTTATGTAGAAATTGTACATCAAGAAAACACGCCAGTCTCCTCGGGAATTCTTAGCTTAGCCACGGCGATCTACTTAAACCTGGTTTCCATATGATCGCAACGATCGCAGCGATCACAGAAAAAAAATGTTCTGCAACCATTGCGATCTTTGAAAACCACAAAATTCTGCTGTCGCTGCAATCTTTGCGATAGTTGTGATCCTTTCGATCCTTGCGATTGAGAAATTTTTATGAAATCCAACGATCGCAACGACCGATCCTGCGATCGTTGCGATTATATGGAAACCAGGCTTGAAGGCCCAGACATACAATACAACTGTTGCGTGCAAGAGCAATATAGGCCCTTTGCAGGACCTGGTCACGTGACACAATTCACAAAAAAATCAGCTTTGGTGGCACAATGGATGGCGTAATCAGAAAGAGCACCTCAAAATTAGTCCATTTGTGGAGTTTGAGCATTTCTTGACGATACTGGAAAGGATTATGATTTATTGAAAAAAAAGCAATTGCCAGTCAGCAATACATTCTTTGTAAACAATCAGATTTTCAAGAAATTCTATCTTTAGTTACAATCAAAAACACTAAAACCCAGGAAAAATACTAACTTTATGGTGCTCTCTTTGATTTTGCTGCCCAGAGCTGAATTTTATGTGAATTGTGTCACGTGACCAGGTCCTTCAAAGGGCCTATTACGCAGCCATGTGTCCACCCCTGCAACTGTTCGGCACGCAACAGATGCAAGAAAAATTGCAACGTGTGGCATCCCCTAAAAATTTTGTTTCGCGCACTAGTTGTATCGTGTCCTATAGCCTTTGGGATCGATTTGACAGTAGGTGCGAGACAGTTTTCTCCTATAAGGACAATTGCTAAATATCTGATGGTATTCAATAAATATAAAATAATCAGACCAAAATTTAAACTCTCATTTTAAAAAAAATCATTAAAATCTTTGATTCAACGTAAATAATATATTAAAAAATCAGTTAAAATCTTAAACGGAGTAAAACTTGAATCTACCCTGCAATCTATTTCCAATCGTTCTGTCTAATGTGATAATGTGGGCATGTTGGATGGTAGGAACAATATAATCTCTTACCTGAGGATTTGGATTCTTTCTAATGTAAAACGATTTTATTGTTCCTGCCATCCAACATGGCTGCGCACACAGGATCGTGAGTCTCTATTGTGGTGCAGCCTCTCTAAAGTCTGGTTTCCATATGATCGCAACGATCGCAGGATCGGTCGTTGCGTTGGGATCGTTGGTTTCCATAAAAAATTCCAAATCGCAAGGATCGCAAAGATTGCAGCGATAGCAGAATTTTGTGGCTTTCAAAGATCGCAAGGGTTGCAGAACACTTTTTTCTGCGATCGCTGCGATCGTTGCGATTATATGGAAACCAGGCTTAAGGGTAGCCTGATTTTCAGACGGCAGGTTGTCGTCCGCTTCCCCCATACCGCTTTGCGGATGATGAAAATCAGGCTACCTCTGGGTCTTTGACTACTAAAGCGACTGTTTCGGTTTCTGGGTCAACGTGTTTGTCGGAGAGTGAGTACTGCCATGGCGTTGGTCATGCCTAGCTTTCACTGGTGTCTTGTTGATCTTGACTAGTTCCTGGCCAGGTCGTAGTTTACCATTCAGATGAGCTGCATAGGGCCCTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28DX0	Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Xenopus tropicalis OX=8364 GN=qtrt2 PE=2 SV=1
Q6DF96	Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Xenopus laevis OX=8355 GN=qtrt2 PE=2 SV=1
Q5R998	Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Pongo abelii OX=9601 GN=QTRT2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006042 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01702 all species →	TGT	Queuine tRNA-ribosyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002616 all species →	Domain	tRNA-guanine(15) transglycosylase-like	Interproscan
IPR050852 all species →	Family	Queuine tRNA-ribosyltransferase	Interproscan
IPR028592 all species →	Family	Queuine tRNA-ribosyltransferase accessory subunit QTRTD1	Interproscan
IPR036511 all species →	Homologous_superfamily	Queuine tRNA-ribosyltransferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46064 all species →	QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan
GO:0016763 all species →	Molecular Function	pentosyltransferase activity	Interproscan
GO:0101030 all species →	Biological Process	tRNA-guanine transglycosylation	Interproscan
GO:0008479 all species →	Molecular Function	tRNA-guanosine(34) queuine transglycosylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15407	QTRT2, QTRTD1; queuine tRNA-ribosyltransferase accessory subunit	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.