Detailed information of gene14979.t3 in Actinoscyphia liui

Genomic Location: chr4:24780640...24811510
NR annotation: XP_020905394.2, ATP-dependent RNA helicase A [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q28141ATP-dependent RNA helicase A OS=Bos taurus OX=9913 GN=DHX9 PE=1 SV=1
Q68FK8ATP-dependent RNA helicase A protein OS=Xenopus laevis OX=8355 GN=dhx9 PE=2 SV=1
Q08211ATP-dependent RNA helicase A OS=Homo sapiens OX=9606 GN=DHX9 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000674 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21010
all species →
HA2_CHelicase associated domain (HA2), ratchet-likeDomainInterproscan
PF00271
all species →
Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF07717
all species →
OB_NTP_bindOligonucleotide/oligosaccharide-binding (OB)-foldDomainInterproscan
PF00035
all species →
dsrmDouble-stranded RNA binding motifDomainInterproscan
PF00270
all species →
DEADDEAD/DEAH box helicaseDomainInterproscan
PF04408
all species →
HA2_NHelicase associated domain (HA2), winged-helixDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044445
all species →
DomainDHX9, first double-stranded RNA binding domainInterproscan
IPR014720
all species →
DomainDouble-stranded RNA-binding domainInterproscan
IPR007502
all species →
DomainHelicase-associated domainInterproscan
IPR011050
all species →
Homologous_superfamilyPectin lyase fold/virulence factorInterproscan
IPR001650
all species →
DomainHelicase, C-terminal domain-likeInterproscan
IPR014001
all species →
DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR002464
all species →
Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR011709
all species →
DomainDEAD-box helicase, OB foldInterproscan
IPR011545
all species →
DomainDEAD/DEAH box helicase domainInterproscan
IPR048333
all species →
DomainHelicase associated domain (HA2), winged-helix domainInterproscan
IPR044446
all species →
DomainDHX9, second double-stranded RNA binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18934
all species →
ATP-DEPENDENT RNA HELICASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0003724
all species →
Molecular FunctionRNA helicase activityInterproscan
GO:0004386
all species →
Molecular Functionhelicase activityInterproscan
GO:0005622
all species →
Cellular Componentintracellular anatomical structureInterproscan
GO:0005730
all species →
Cellular ComponentnucleolusInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0016887
all species →
Molecular FunctionATP hydrolysis activityInterproscan
GO:0043138
all species →
Molecular Function3'-5' DNA helicase activityInterproscan
GO:0045944
all species →
Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0050684
all species →
Biological Processregulation of mRNA processingInterproscan
GO:1990904
all species →
Cellular Componentribonucleoprotein complexInterproscan
GO:0003725
all species →
Molecular Functiondouble-stranded RNA bindingInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene14979.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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