Detailed information of gene15122.t1 in Actinoscyphia liui

Genomic Location: chr4:27060210...27104123
NR annotation: XP_020906601.1, collagen alpha-1(I) chain [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P20908Collagen alpha-1(V) chain OS=Homo sapiens OX=9606 GN=COL5A1 PE=1 SV=3
Q60467Collagen alpha-1(V) chain OS=Cricetulus longicaudatus OX=10030 GN=COL5A1 PE=2 SV=1
O88207Collagen alpha-1(V) chain OS=Mus musculus OX=10090 GN=Col5a1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000269 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391
all species →		CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF01410
all species →		COLFIFibrillar collagen C-terminal domainFamilyInterproscan
PF02210
all species →		Laminin_G_2Laminin G domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001791
all species →		DomainLaminin G domainInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000885
all species →		DomainFibrillar collagen, C-terminalInterproscan
IPR008160
all species →		RepeatCollagen triple helix repeatInterproscan
IPR050149
all species →		FamilyCollagen superfamilyInterproscan
IPR048287
all species →		DomainThrombospondin-like, N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023
all species →		COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005201
all species →		Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan
GO:0030020
all species →		Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198
all species →		Biological Processextracellular matrix organizationInterproscan
GO:0031012
all species →		Cellular Componentextracellular matrixInterproscan
GO:0062023
all species →		Cellular Componentcollagen-containing extracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19721COL5AS; collagen type V/XI/XXIV/XXVII, alpha-Glycosaminoglycan binding proteinsko00536deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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