Gene detail

Detailed information of gene15232.t1 in Actinoscyphia liui

Genomic Location: chr4:28480224...28496219
NR annotation: XP_020917557.1, calcium-binding mitochondrial carrier protein SCaMC-2 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene15232.t1

ATGACAGACAGATACAAGAAACAAGCAAAGGACCTTGTCCCGACATGCCTTGCAGGCATACCCATATTATACGCATGCGCTTTTGCTACCACTCATGTAAATAACATGGCGGACAACCCTGACGGTCATGATGAACATGATTATCGTTCAGACCCAGAAAGATTAGAACGCCTATTCAAAGAGCTAGATAAAAATAAAGATGGTAAAATTGATGTCCATGAGCTTTCTGAAGGGCTGCAAAAATATCATGGCGCAAGGTACAGACCAGGGCAGGCCCAGCATATTATGACACTGGGAGATCAGAATCTTGATGGACATATGTCATTTGAAGAGTTTGTGAAATATACAACGGATCATGAGAAAAAGCTGTGGCTTGTTTTTAAAAGTGTAGACCAAAATAATAGTGGCACTGTAGATGCTTCTGAGCTTAAAAATGCTTTTGAACATATGGGAGTTAAAGTTACTGAACAAGAGATAGGTCTTTTAATAAAAGGGATGGATAAAGATAAAACGCTCAAAGTCAATTGGAATGAATGGCGGGAATATCATTTACTTAACCCAAGCGGGCATAGTATGCATGACATTATACAGTTCTGGAGACACGCAATGTTTATCGATATTGGTGAGGATATGCTGATTTATGATGAATTCACAGAAGCAGAAAAAGTATCAGGAATGTGGTGGAGACAGCTTGTTGCAGGGGCTGGTGCTGGTGTATTTTCAAGAACAGCCACTGCACCACTTGATAGACTAAAAGTATTATTACAGGTCCAAGGCAGTGGGGCCAACAGATTTGGCATCGTACAAGGATTTAAAATGATGTTATATGAAGGTGGAGTGAAGTCATTATGGAGAGGAAATGGAGCCAATGTTATTAAAATAGCACCTGAGTCTGCCATTAAGTTCTTTGCCTATGAAAAGGCCAAGAAACTTGTTTGTTCAGATGAAAAGAATCTTGGAGTGGCAGAACGTTTGCTAGCAGGCTCCATGGCTGGTGTGACTTCACAAACAAGTATTTATCCATTAGAGCCTCAACGTAGCAAAAGATTTTATAATTCCAGGTGTACTTATTATGCGAACTCTGATGCAAGTTTCCAACTCGAACGAATTCAATTAAGCGGTGATGTCAATCCTAACCCTGGCCCAAATAGTGCAGAAAATCAACAGGAAAAGGAAGATGCTATTGGTATGACTCCAGGAAATGGCATTAAGATAGGACAATGGAATATAAACAACTTGACCGATGCAAAATTTGAACAGATAAAATTGTTATTAACATCAAAAGCAGAAATCGATGTATTATTCCTCATTGAAACCTTCCTCAAGCCAACAAAACCAGACAGTGTACTGAAAATACATGGCTACACCTTAATGAGAAAAGATAGGGTCGGCCCAAAGAAAGGAGGAGGTATACTTGCTTACGTTGCTGACAATCTTAATGCCGACAGAATTACGAGCCTAGAGGATAGCGCTCTTGAAACCCTCTGGCTGCATGTCAACCCATACAAATCAAAGCGCCCAATTCTCGTTGGTGCTGTCTACCGCCCGCCTTCAACAACTGCGGATACTGATGCTAAACTCGAACTTAATATCGAAGCAGCTTATCTCAGAAACCAAGAGATGTATATTCTTGGTGACTTCAATGTCAATTACCTTGACTCAACTACATATAAAAAACATCGGTTAATGAAAGCGCTGAAAAGTTTACGCTTAAGTCAAGTCGTTGAAGCCGTTACACGTCCAAAGAGTTCTACATGCTTAGACCACGTCTACACTACTCATCCAACGCATATTGCTAATATATCAGTGCCAAATATTGGACTTGCAGACCATCTTCCAGTATTTATTAGACGAAAATACTGTAGAAAAAAGAACGGATCAAAACACAACACTATTGAATATCGTGATTATAAGAATCTAAACAAAGAAAATCTATTGCATGATTTAGAAAATGTCTCTTGGGACACTACCTTCGAGTCAAAAGATGTAAATGAAGTTCTCTATTCAATAGAGAAAACACTGAATGAAATCTTAAACTGTCACATTCCTCTAAAAACAAAGCGTGTCAAAAGACCAAATCAACCTGCCTGGATGTCAAAGGAAATACTGGATTTATTAAAAGAAAGGGACAAGCTGCTGAAAAAAGCACGAAAGACAAATAAATTGGACGACTGGGACCTTTATATTCACACAAGATCCAAGATTGTCAAAGTCATCAAAAAGACAAAACGAAACTTTTTTCGTGAGAAAATAGACGAAAACAAAGGGAACCCCAAGGGTGTATGGAATGCATTGAAAAATTTAAGTGGAACATCCAAATCAAGTACACAAATCAAAGAATTGGTGACGGAAAACGGCGTTGTCCGTGATGAGAAATCTATAGCGAATGAGCTAAATAGCTATTTCACCAACATTCTTGAGCAACTTGGAAATGACCAACTGTGTGATGAGGTACTCAAGACACGACTAGCTATTCGCAAAACAGGACAGTATACGGGTCTTGTGAATGCAGCAAGTTTAATCTATCAAAAGGAAGGTCTGCGCAGCTTTTATAGAGGCCTTTTTCCAAGTTTACTGGGGATTATTCCATACGCTGGCATTGATTTAGCAGTTTATGAGACATTAAAGAACTTTTATCTCGGATACCATAAAAATGAATCAGCAGATCCAGGAGTACTAGTACTACTAGCATGCGGTACAGCGTCTAGTACTTGTGGACAGCTTGCTAGTTACCCTCTCTCCTTAGTCAGGACCAGACTACAAGCACAGGCCCGTGAACGTGGTCAGAGTACTGGTGATAACATGTTTACATTACTGAGTAGAATATTTCGAGAGGATGGTGTTCGTGGTTTATACAGGGGTCTGGCCCCTAACTTCTTGAAGGTCGCTCCAGCAGTCAGCATTAGTTACGTTGTATACGAACACCTGAGAATGTTTCTTGGAGTTATATAA

Transcript

gene15232.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T0U6	Mitochondrial adenyl nucleotide antiporter SLC25A24-B OS=Xenopus laevis OX=8355 GN=slc25a24-b PE=2 SV=1
Q9BV35	Mitochondrial adenyl nucleotide antiporter SLC25A23 OS=Homo sapiens OX=9606 GN=SLC25A23 PE=1 SV=2
Q5XHA0	Mitochondrial adenyl nucleotide antiporter SLC25A24 OS=Xenopus tropicalis OX=8364 GN=slc25a24 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003641 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24089 all species →	SOLUTE CARRIER FAMILY 25	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005347 all species →	Molecular Function	ATP transmembrane transporter activity	Interproscan
GO:0015866 all species →	Biological Process	ADP transport	Interproscan
GO:0015867 all species →	Biological Process	ATP transport	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene15232.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.