Gene detail

Detailed information of gene15303.t1 in Actinoscyphia liui

Genomic Location: chr4:29271831...29275720
NR annotation: XP_020917618.1, endoplasmic reticulum chaperone BiP [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene15303.t1

ATGAAGTTTTTTTCAGGGTTTTGTACCCTGGCCGTAGTCAGTAGTTTAGTTTTAGTCCAAGGAGCTGAGAAAGAGGAGAAAAAGGACGACAAAAAATCCGAAAAGGACAAAGTTGGAACAGTGATCGGAATCGATTTAGGAACGACATATTCTTGTGTCGGTGTTTTCAAGAATGGTCGTGTGGAAATCATCGCAAACGACCAAGGAAATCGTATCACCCCATCGTACGTAGCCTTCACCCCAGAAGGCGAGAGGTTGATCGGTGATGGAGCCAAGAATCAGCTTACATCCAACCCAGAGAACACTGTGTTCGATGCTAAGCGGTTAATCGGTCGAACATGGGATGACCCTTCTGTACAACACGATCTCAAATATTTCCCATTCAAAGTCATAGAGAAGAATAAGAAACCCCACGTCCAAGTCTCTGTTGGTAAGGACAAAAAGACTTTTACTGCCGAGGAAATCAGTGCCATGGTCTTGGTCAAAATGAAGGAAACTGCTGAGGCATATCTTGGAAAGAAGGTCACTCATGCTGTCGTCACTGTCCCCGCTTACTTCAATGATGCTCAGAGAAGAGCTACAAAGGATGCTGGCGTTATTGCTGGTTTAATTGTCATGCGTATCATCAACGAGCCCACCGCTGCAGCTATTGCATATGGAATGGACAAGAAAGAGGGAGAAAAGAACATCCTTGTGTTTGATTTAGGCGGTGGTACTTTCGATGTCTCTCTCTTGACCATTGATAATGGTGTCTTTGAAGTCGTCTCAACTAATGGAGATACTCATCTTGGTGGTGAAGATTTTGATCAACGTGTCATGGAGCACTTTATCAAGCTCTACAAAAAGAAGAAGGGCAAGGACATCCGCAAAGATAACAGAGCTGTTCAGAAGTTGCGTCGTGAGGTTGAGAAGGCCAAGAGAGCTCTCAGTGCCCAACATCAGGCTAGAATTGAGATTGAATCTTTCTTTGATGGTGAAGACTTCTCAGAAACTCTTACCAGAGCCCGCTTTGAAGAACTCAATGCTGATCTTTTCAAATCCACATTAGAGCCTGTCAAGAAGGTCCTTAAAGATGCTGACCTCAAGAAGGCTGAAATCCAGGAGATTGTTCTCGTTGGTGGCTCCACTCGTATCCCCAAGGTCCAAAAACTTGTCAGAGACTTCTTTGATGGTAAAGAGCCAAGCAGAGGCATCAACCCTGATGAAGCTGTTGCTTTTGGTGCTGCCGTGCAGGCTGGAGTACTCGGTGGAGAGGAGGACACTGGAGAGGTTGTGTTGTTGGACGTCAACCCACTTACCTTGGGTATTGAGACAGTTGGAGGTGTCATGACCAAGCTTATAGGCCGCAATACTGTCATTCCTACCAAGAAATCTCAAATCTTCTCAACTGCTGCTGATAACCAGAACACTGTCACCATCCAAGTCTTCGAGGGTGAGCGACCAATGACCAAAGACAACCATCTTCTTGGCAAGTTTGACTTGAACAACCTCCCCCCTGCCCCACGTGGCGTTCCCCAAATTGAAGTCTCCTTTGAAATTGATGTGAACGGTATCCTCAGAGTGTCTGCTGAAGACAAAGGTACTGGAAACAAAGAAAAGATCACCATTACAAATGACCAGAACAGACTCACCCCTGAGGATATTGAACGTATGGTCAATGACGCCGAGAAATATGCTGATGAAGACAAGACTATCAAAGAGAAGGTAGAAGCCAAGAACGAGTTGGAGAGCTACACTTACTCTCTGAAAAATCAAGTTGGAGACAAAGAGAAACTAGGAGGAAAACTCTCTGAAGAGGACAAGAAAACAATAGTGGATGCAGTAGAAAAGACCATTGCATGGATGGACAAAAATCTTGAAGCATCATCAGAGGATCTTAAGAAACAAAAGAAAGAACTTGAAGATGTTGTCCAGCCAATTATTACTAAATTATACCAAGGAGCTGGCGGACAGCAAGGTGGTGAACAACAACAAGAAGGCGGAGCCCCTCCAACAGAAGAGGAAAAACCAACAGAAGACAAGGATGAATTGTAA

Transcript

gene15303.t1

CTAACTTTACATCTCTTTTTACCGGTATTTTGAGAGAAAAAAATACACAGTATGAAGTTTTTTTCAGGGTTTTGTACCCTGGCCGTAGTCAGTAGTTTAGTTTTAGTCCAAGGAGCTGAGAAAGAGGAGAAAAAGGACGACAAAAAATCCGAAAAGGACAAAGTTGGAACAGTGATCGGAATCGATTTAGGAACGACATATTCTTGTGTCGGTGTTTTCAAGAATGGTCGTGTGGAAATCATCGCAAACGACCAAGGAAATCGTATCACCCCATCGTACGTAGCCTTCACCCCAGAAGGCGAGAGGTTGATCGGTGATGGAGCCAAGAATCAGCTTACATCCAACCCAGAGAACACTGTGTTCGATGCTAAGCGGTTAATCGGTCGAACATGGGATGACCCTTCTGTACAACACGATCTCAAATATTTCCCATTCAAAGTCATAGAGAAGAATAAGAAACCCCACGTCCAAGTCTCTGTTGGTAAGGACAAAAAGACTTTTACTGCCGAGGAAATCAGTGCCATGGTCTTGGTCAAAATGAAGGAAACTGCTGAGGCATATCTTGGAAAGAAGGTCACTCATGCTGTCGTCACTGTCCCCGCTTACTTCAATGATGCTCAGAGAAGAGCTACAAAGGATGCTGGCGTTATTGCTGGTTTAATTGTCATGCGTATCATCAACGAGCCCACCGCTGCAGCTATTGCATATGGAATGGACAAGAAAGAGGGAGAAAAGAACATCCTTGTGTTTGATTTAGGCGGTGGTACTTTCGATGTCTCTCTCTTGACCATTGATAATGGTGTCTTTGAAGTCGTCTCAACTAATGGAGATACTCATCTTGGTGGTGAAGATTTTGATCAACGTGTCATGGAGCACTTTATCAAGCTCTACAAAAAGAAGAAGGGCAAGGACATCCGCAAAGATAACAGAGCTGTTCAGAAGTTGCGTCGTGAGGTTGAGAAGGCCAAGAGAGCTCTCAGTGCCCAACATCAGGCTAGAATTGAGATTGAATCTTTCTTTGATGGTGAAGACTTCTCAGAAACTCTTACCAGAGCCCGCTTTGAAGAACTCAATGCTGATCTTTTCAAATCCACATTAGAGCCTGTCAAGAAGGTCCTTAAAGATGCTGACCTCAAGAAGGCTGAAATCCAGGAGATTGTTCTCGTTGGTGGCTCCACTCGTATCCCCAAGGTCCAAAAACTTGTCAGAGACTTCTTTGATGGTAAAGAGCCAAGCAGAGGCATCAACCCTGATGAAGCTGTTGCTTTTGGTGCTGCCGTGCAGGCTGGAGTACTCGGTGGAGAGGAGGACACTGGAGAGGTTGTGTTGTTGGACGTCAACCCACTTACCTTGGGTATTGAGACAGTTGGAGGTGTCATGACCAAGCTTATAGGCCGCAATACTGTCATTCCTACCAAGAAATCTCAAATCTTCTCAACTGCTGCTGATAACCAGAACACTGTCACCATCCAAGTCTTCGAGGGTGAGCGACCAATGACCAAAGACAACCATCTTCTTGGCAAGTTTGACTTGAACAACCTCCCCCCTGCCCCACGTGGCGTTCCCCAAATTGAAGTCTCCTTTGAAATTGATGTGAACGGTATCCTCAGAGTGTCTGCTGAAGACAAAGGTACTGGAAACAAAGAAAAGATCACCATTACAAATGACCAGAACAGACTCACCCCTGAGGATATTGAACGTATGGTCAATGACGCCGAGAAATATGCTGATGAAGACAAGACTATCAAAGAGAAGGTAGAAGCCAAGAACGAGTTGGAGAGCTACACTTACTCTCTGAAAAATCAAGTTGGAGACAAAGAGAAACTAGGAGGAAAACTCTCTGAAGAGGACAAGAAAACAATAGTGGATGCAGTAGAAAAGACCATTGCATGGATGGACAAAAATCTTGAAGCATCATCAGAGGATCTTAAGAAACAAAAGAAAGAACTTGAAGATGTTGTCCAGCCAATTATTACTAAATTATACCAAGGAGCTGGCGGACAGCAAGGTGGTGAACAACAACAAGAAGGCGGAGCCCCTCCAACAGAAGAGGAAAAACCAACAGAAGACAAGGATGAATTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90593	Endoplasmic reticulum chaperone BiP OS=Gallus gallus OX=9031 GN=HSPA5 PE=1 SV=1
P20029	Endoplasmic reticulum chaperone BiP OS=Mus musculus OX=10090 GN=Hspa5 PE=1 SV=3
G3I8R9	Endoplasmic reticulum chaperone BiP OS=Cricetulus griseus OX=10029 GN=HSPA5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000441 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00012 all species →	HSP70	Hsp70 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018181 all species →	Conserved_site	Heat shock protein 70, conserved site	Interproscan
IPR029048 all species →	Homologous_superfamily	Heat shock protein 70kD, C-terminal domain superfamily	Interproscan
IPR029047 all species →	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR042050 all species →	Domain	Endoplasmic reticulum chaperone BIP, nucleotide-binding domain	Interproscan
IPR013126 all species →	Family	Heat shock protein 70 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19375 all species →	HEAT SHOCK PROTEIN 70KDA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005788 all species →	Cellular Component	endoplasmic reticulum lumen	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0034663 all species →	Cellular Component	endoplasmic reticulum chaperone complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09490	HSPA5, BIP; endoplasmic reticulum chaperone BiP	EC:3.6.4.10	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.