Gene detail

Detailed information of gene15504.t1 in Actinoscyphia liui

Genomic Location: chr4:31908741...31914923
NR annotation: XP_031562449.1, dual specificity protein phosphatase 12-like [Actinia tenebrosa]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene15504.t1

ATGATGCTGATGATTCCATTTGGAAATTCATTTACTTTGGGCTACCTGTGTGGAAACCACGCAAATCTTAGTGATTCTGGGGTTCCTGTGGTAAAGAACACAGGAAACCCAAAAGTTCGACGATCGAGAAACAGACAAAATGGTTACAGAATCAGGCAGCAACTTAGCGCTTCTTGTACGGCGTATTTTATGACAAATCCAGACGCCATGAAACCTATAAAGACTGGGTTATTTGTTGGGACGAGAAAAGACGCAGAGGATCGTGAGAATTTGATGAAATATTCCATTGTACGAGTGTTAACCGTGGACAGTCAACCACTTGATGAGGAGTACATGAGTTATTACGGTCTAAAAACCCTTTATATAAACTGTCTAGATGAGCCTACTGCTGACCTACTTACATCGTTTGATAGATGTATTCAGTTTATTGACGAGGGACTAGCAAACGATGAAGCAGTGCTTGTACACTGTCTTTCAGGAGTGTCTCGCAGTGTTACCATCATACTGGCATGCTTGATGAAAACAGATTATTTGACTCTAGATGAAGCTATTAGCAAACTCAATCAAATTTACTCCCCAGAAAAAGTAAGTCCAAACACTGGTTTCATGGATCAGCTGAAGCTTTATGAAGAAATGGACAGATCTGTAGATACATCTAGTGCCGTCTTTAAGCAGTTCAGACTTGAGTTACTTGCCAGCCAAATACAAGATGGCAGTCACTCAGATGGTAGCGTGTTATCAAGATTCCTTGAAGAAGTCAAATCTAGAAATACCTCAAGTGACAAACTCTTTAAGTGTAGAAAATGCAGGTATAAAGTATTTGACTCCAGTAGCCTTGTTGGGCATGAAAAAGGACAAGGGCCACCATCATTTGGTTGGAATAAAGAAAGAAGAAGTGTCCAACATGGTAGCCCAGATAATGTAGAATGTACATCTTTATTTATTGAGCCAGTTGAATGGATGTCATCAGTAATGCTTCTAGGGACTTTGGATGGAAAGCTACTGTGTCCCAAGTGTAGTTGCAGATTAGGTTCTTTTAATTGGTCAGGAATGCAGTGTTCCTGTGCATCATGGGTAACTCCGGCTTTTCAGTTCCACAGAAACAAATTAGATCAGGTTATCAAAATGCAGACAATCTGATATTGCTCGAGACAAGCAAAGGTCGAGGCATGCTAGATATAAAATTGTTGTGTTGATATTCATGTGGTTTTATCGATTTCTACCCATGCTCCCTTTCAAGTCAAGTAGCGGAGGCTTTCGGCTTTTTGACCGACAACCTTTTTTGAAATAGGTGTATAAAAGTGCACTGGACGGATCACGTCTTCTGAAAGAGCAACAGTACAGTGAGAGAAACATGGATGACTGACTTGAGGCGATATGGAGTGGCGTACTTTGAAGGGGTACCTCCAAGTGACGAGGGTATCAATGAAGTCTGTAATTGCATTGGTCAGACCATACAATGGACATCCAACAAATTGCAATGTACTGACTATCCAGTCAGATAAATCAACAGCAAAAGATTTCGACCCCAATGTTTATGGTGCCAAACCACGCCCCGTGCACATGGACTGCACCTATTATCAGCAACCAGCCAGGTTATCTTGTATATTCTGCACCGGTACAAGATACCATTAACTTCTTTGTTGACTGCCTCAAAATCGTTGAGGATATACGCCAAGAGGAGCCAGAAGCCTATCACCTGCTGAGAAACAGTCCTGTTCGCATTGGCAGATGGAGGTTGGCCGTCCAAGAAGAGTGCCCTACGGAAGATCACCACATGTATCAGTCTGAGAGAGTTGTGAAGAGAGAGCTCATCCAGTATGACCGAGACGAGCTTCGACTGATGTTCTCAATCAATCGAACGGCATCTCAGGGTTCGACATGGACTGTTTCAAAGACCAAAAATACATACAGTGATACTACGAGGCGTTCAAGTTCCTGTACTCCAAACTCTACGATCGACCCCAAGTACATTTTTTTAATGAATATAAACTTGTACATAAAAGAAAATTTGGCGGAACAGAAAAACCCAAAATCCAACTGAAGTTTACAAAACGAAGGTCGCGATACAACGAATATGGCTGTAAACAAATAAAAACAAAGGATATTTCACCAATTGAAGGGGTGCCCATGAAATCCACCTAAGTGCTCTTTTGTCAAATTTTTGGAACTTTTGTCTCAAATTCGCTGAAAATCAGAAATCTGACTCTTCTTTTGACAAATATCACGGATTCACTGTTTTTAAGTCGGAAAGAAAATCTTCGTTGAGTTTATAGGCAGTCAAAACTATGCCTACCCTTGGTTCCAGAGGGGCTTGCCTGTTGAAGCGACGAAAGCAACGAGAGCGGAGCGACGAGCCCCTAGGTTTGTTGAGTGAAGTCTACCGAAATATACATTTCCAGTACGAAAGTGAATACTATACTATAAATCGTAAAACTTCTCAAAACCTCTGGCACCCAGGGTAAACTATGCCGCGCTTTTGCAAAGATTTGCGCTTTTCATCGTTTTTCAAATCTAACTGAATGTGTTTAAAATCCCTATTTTCAACCTCCTTTTTTCACAAGAATACACGGGTTTGGTGTTTTGAACCCCCAAAAAACTTTGATTTTCAAGGAATGTCAAAAAGGCGCATTTTTGACGTTATTAAGCTAGCGAGATCAAAAATCATCGATATTCACCTTTATTTATTTATTATTTATTAGAGACTTCCATTAAGCTTACAACACAAGAAAACATAATAAATATATAAATGCTTAATGAGGGGCAAACGAACGGACTCTAGGTCCCGGCGAGGTTGGCCCCAAGAGAAAAAAAAAATGTAGATGATGATAATGAATAATTATAATTAAGATAAAAACAAAAGAGAAGACATTTTAGGGGGGAGGCACTGTAGCTAACAACAGTTAGAGCGATTTACAGATCTACAGTGTGGACAGACAGTTTTCCAGGTCTGAATTCTGTTAACATCAAAATTAGTAGTAAAGTTGTTGAAGTAAAGCTTGAAGAGCTGAGATTTAAATGACTGAAAAGTTGAGATCTGACGTAACGTAAGTGGTAAATTATTCCATAAAATGACTATGCGATTAAAGAAAGAGTCCCTAAATAAAGATGTACGAAAGCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D0T2	Dual specificity protein phosphatase 12 OS=Mus musculus OX=10090 GN=Dusp12 PE=2 SV=1
Q9JIM4	Dual specificity protein phosphatase 12 OS=Rattus norvegicus OX=10116 GN=Dusp12 PE=1 SV=1
Q9UNI6	Dual specificity protein phosphatase 12 OS=Homo sapiens OX=9606 GN=DUSP12 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006118 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020422 all species →	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR016278 all species →	Family	Dual specificity protein phosphatase 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45848 all species →	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0008138 all species →	Molecular Function	protein tyrosine/serine/threonine phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14819	DUSP12, YVH1; dual specificity phosphatase 12	EC:3.1.3.16 EC:3.1.3.48	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.