Gene detail

Detailed information of gene15504.t3 in Actinoscyphia liui

Genomic Location: chr4:31908741...31917403
NR annotation: KXJ29564.1, hypothetical protein AC249_AIPGENE18530 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene15504.t3

ATGATGCTGATGATTCCATTTGGAAATTCATTTACTTTGGGCTACCTGTGTGGAAACCACGCAAATCTTAGTGATTCTGGGGTTCCTGTGGTAAAGAACACAGGAAACCCAAAAGTTCGACGATCGAGAAACAGACAAAATGGTTACAGAATCAGGCAGCAACTTAGCGCTTCTTGTACGGCGTATTTTATGACAAATCCAGACGCCATGAAACCTATAAAGACTGGGTTATTTGTTGGGACGAGAAAAGACGCAGAGGATCGTGAGAATTTGATGAAATATTCCATTGTACGAGTGTTAACCGTGGACAGTCAACCACTTGATGAGGAGTACATGAGTTATTACGGTCTAAAAACCCTTTATATAAACTGTCTAGATGAGCCTACTGCTGACCTACTTACATCGTTTGATAGATGTATTCAGTTTATTGACGAGGGACTAGCAAACGATGAAGCAGTGCTTGTACACTGTCTTTCAGGAGTGTCTCGCAGTGTTACCATCATACTGGCATGCTTGATGAAAACAGATTATTTGACTCTAGATGAAGCTATTAGCAAACTCAATCAAATTTACTCCCCAGAAAAAGTAAGTCCAAACACTGGTTTCATGGATCAGCTGAAGCTTTATGAAGAAATGGACAGATCTGTAGATACATCTAGTGCCGTCTTTAAGCAGTTCAGACTTGAGTTACTTGCCAGCCAAATACAAGATGGCAGTCACTCAGATGGTAGCGTGTTATCAAGATTCCTTGAAGAAGTCAAATCTAGAAATACCTCAAGTGACAAACTCTTTAAGTGTAGAAAATGCAGGTATAAAGTATTTGACTCCAGTAGCCTTGTTGGGCATGAAAAAGGACAAGGGCCACCATCATTTGGTTGGAATAAAGAAAGAAGAAGTGTCCAACATGGTAGCCCAGATAATGTAGAATGTACATCTTTATTTATTGAGCCAGTTGAATGGATGTCATCAGTAATGCTTCTAGGGACTTTGGATGGAAAGCTACTGTGTCCCAAGTGTAGTTGCAGATTAGGTTCTTTTAATTGGTCAGGAATGCAGTGTTCCTGTGCATCATGGGTAACTCCGGCTTTTCAGTTCCACAGAAACAAATTAGATCAGATAAATCAACAGCAAAAGATTTCGACCCCAATGTTTATGGTGCCAAACCACGCCCCGTGCACATGGACTGCACCTATTATCAGCAACCAGCCAGGTTATCTTGTATATTCTGCACCGGTACAAGATACCATTAACTTCTTTGTTGACTGCCTCAAAATCGTTGAGGATATACGCCAAGAGGAGCCAGAAGCCTATCACCTGCTGAGAAACAGTCCTGTTCGCATTGGCAGATGGAGGTTGGCCGTCCAAGAAGAGTGCCCTACGGAAGATCACCACATGTATCAGTCTGAGAGAGTTGTGAAGAGAGAGCTCATCCAGTATGACCGAGACGAGCTTCGACTGATGTTCTCAATCAATCGAACGGCATCTCAGGGTTCGACATGGACTGTTTCAAAGACCAAAAATACATACAGTGATACTACGAGGCGTTCAAGTTCCTTGCCGGGGATGGTGCAATCTCGCTCGTCTAACACGTACAGTATAGCCAGGTTTGACGTACTGAGAGATCTAGGCCTATGCAAAATGGACATCACTCTGCAGAACGACGTCAATTCTGGGCACAATGTGATTCTTTCAATGTTCCACGGGATGTGGCAGAACCGTTGCTTGAGTCTTGTTGTTGGATTCAAGATTCCTGAGCTGCTGTGCAACACCGAGGAACCTTCTGTCACCATCGAAGACATCGCCTTGAACATAGGATGCTCGTCAAGCAAGCAGCTCTATACCATCATGCGAGTGCTTACTCAGTGGGGTATTGGTGTAGAACTGGAGGGCAAGCGTTTCACCAAGAACCATGCCATGGAACTGTTGAGACGAGACAAAGGTTCAAGCCTTGGCCACTTGGTGGACTACTTTTGTAGTGACGAGCATTTGACAGCGATGAGATCTCTGCCCAAATGTGTGAGGCAAGACAAGCCAGCATTTATCCTGGAACATGGGATGAATCACTTTGAATACATGAATGAAGTGGACACCCGGTCTTACGACACTGGGAAAATGTTTGAAGGTGTATCTACGCATCCCATTGGTAGTGCTGAGCGGAGGAGAGAGTTTGCTGCGAATTATCAGATTGCAATGGAGTCTTTTACTAACTTGGAAATCTTTCCAGATGCCCAAGGGGTCAACACAGTGTACAAGTGTTTCCCGTGGTCGACTTGTAGCACTCTGGCCGACTTGGGTGGTTGTTCAGGCCACTTTCTTGCATCCATTCTGAAAGAGCCCCACTGCCAGCACATCCAAGGGTACGTGGTGGACCTACCAGACGTCATTGACGAGGCACAGAGAAATGTCCAAAGCCTTGGCATTCCAGAGCACCGCGTTCACTTTGTGAAACATAACGTAATCGAGTCTTCTCTGAGCAACTTAAAGCTACAAGCTGACACAGTGATGTGCAAGAATTTCATAGGCATGTTTTGGGAAGACCAAGAAAGATTCGCCAAGATTCTCCACAATTCCCGAAGCGTTTTCACTGAAGATAGTAGTGGCAGACTGCTTATCATCGAGCCTTGTCCTTCTGATGTTGGTGACATGAATCATAATTTTGGGGTGAATGGATTGCAGCATGGGTTTATCAGCGTACACGTTGCTAATATCAGCTGTACTAGATACTATTCCAAAAGCGAGTGGGTTGAGCGTCTCCAAGACATTGGCCCCAAATCAGGCTACCAATTAAGTCAAGTATACGATACATTTCCTGGGGGATACAACATATTTGAACTCTCGACCGTTTAA

Transcript

gene15504.t3

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D0T2	Dual specificity protein phosphatase 12 OS=Mus musculus OX=10090 GN=Dusp12 PE=2 SV=1
Q9JIM4	Dual specificity protein phosphatase 12 OS=Rattus norvegicus OX=10116 GN=Dusp12 PE=1 SV=1
Q9UNI6	Dual specificity protein phosphatase 12 OS=Homo sapiens OX=9606 GN=DUSP12 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006118 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan
PF00891 all species →	Methyltransf_2	O-methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020422 all species →	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR016461 all species →	Family	O-methyltransferase COMT-type	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR001077 all species →	Domain	O-methyltransferase domain	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45848 all species →	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008138 all species →	Molecular Function	protein tyrosine/serine/threonine phosphatase activity	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0008171 all species →	Molecular Function	O-methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene15504.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.