Gene detail

Detailed information of gene15673.t1 in Actinoscyphia liui

Genomic Location: chr4:34082523...34101078
NR annotation: XP_031567027.1, structural maintenance of chromosomes protein 4-like [Actinia tenebrosa]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene15673.t1

ATGGCGGATTTAGAACCGATGGAGACTGAAAACAGCCAAGAACAGACCGCTGTGGATGAACCAATAGTTGAAAATACAAAAAGAGATTCTAGGCTTATTATAAATAAAATAGTAAATGAAAATTTTAAGTCTTATGCGGGAATTCAAGAGCTTGGACCCTTTCACAAGAGTTTTTCCTCCATTGTTGGTCCAAATGGCAGCGGTAAATCTAATGTTATTGATGCTATGCTTTTTGTGTTTGGATATCGTTCAAAAATGATTCGAACGAAGAAAGTTTCTCAACTGATTCACAACTCGTCTGCTCATCCCAATGTTCCGTGTTGTACTGTGGCTGTACACTTCCTCGCCATCATTGATTTGCCAGGGGATGAGTATGAGGTTGTACCAAACAGTGCCTTTGTAGTATCACGCACGGCTCGTAGGGATAATTCCTCAGATTATTTTGTGAATGGAAGAAAAACACCCTTCAAGGAGGTTGCAGTTCTGCTGCGAGGATCTGGAATTGACTTGGATCACAACAGGTTTTTAATTCTTCAGGGTGAAGTGGAGCAGATATCTATGATGAAACCTAAGGCCCTAACGGAACATGAGGATGGCATGCTAGAATACTTGGAAGACATTATTGGATCCAGCAAATACAAAGAACCTATCGAAGAACTTGCTAAACAAGTAGAAGTACTCAATGAAGCCAGAGGAGAAAAATTGAACCGTGTAAAGGCAGTTGAGAAGGAGAAAGAAGAACTCCAAGGATCTAAAGATGAAGCTGTAGAGTACATCGACATGGAGAATAACATTACTAGACAGAGAAACACTCTGTTCCAAAAATATGTCTATGAATGCACAAAGAATGAAGAGAAAGCTGCTTCCAAGAGAGATGAAGTAAAAGTAGGATTTGATGAGTTACACAAGGACATGAAGGAAATCACTGATCGCAAAAAGACAAAGGAAAAAGAGCACAAAAAGTTGGCAAAACAGTACGAAGAGCTTTCTAAAGTCACAGAAGAAACTAAAAAGAATTTCACTGCTTATGAGAGAGATGACCTAAAACTGAGAGAGGATTATAAGCATGCCAAGCAGAATGGAAAGAAACTGCAAAAGAGCTTACAAAAGGAAAAAGAAAAGTTGGAAACCTTGAAACAAGAGCCTGAAGCAAACCAGAAACAAGTTGAAGAACTTCAAGCCAGGAAAGAAAATCTGGAGGCCCAGAAAGTTAAAGAAGAAGAAAAGTTAGCAGAAGTTATGGCAGGTTTGAAAACTGAGACTCAAGGACTACAAAGTGAAAAAGAGACAAAAGAGACAGAATTGATGGAAAAAAATAAAATTTCAAATGAAGCCAATGAGCTTGATGTATACCGCAGTCAACATGACAATGCTATGTCACAACTTAGAGAAGTGCGCAACAACTTAGAGACAGCAATCCATAAATCACAGCAAAGAAATAGTGAGATCAAAACCATTGAAAAGGAACTCCCAGCACTGAAAGCATCATTAAAACAGTCAGAATCAGAGCTGGAGAAAGCCATCCATGGAGAGGAGAAAACAGCAGGAGAGTTACGGACAATGAGATCCAAGGTTGAAGAAGCAAGAAGTTCACTCCAAGCATCTCACAGCAGGGGAAATGTCCTTGATGCCTTGATGAAGCAGAAAGAAGCTGGAAAGATCAAAGGGATTTATGGAAGACTGGGTGATCTTGGTGCGATAGATGATAAGTATGATGTTGCCATCAGTACAGCCTGTGGCGCTTTGGATAATATTGTCTGTGATACCATGGAAACAGCCCAGGCATGTGTGCAATATCTCAAGCAGAACAACATTGGTGCTGCTACTTTCATCGGCTTGGACAAAGTTGAAGTGTGGAGAAAAGATACAACTTCCAAAATTCAAACTCCAGACAATGTTCCTCGGTTGTTTGACTTGGTGCGTGTTAAAGACAGTAAAGTATCGACAGCTTTTTACTTCGCTTTGAGGAACACACTGGTTGCTGTAGACTTGGAGAAAGCAACCAAGATAGCCTTTCAGGGCAACAAGAGATGGCGTGTTGTGACATTACAAGGACAGCTCATTGATCAATCAGGCACAATGAGTGGTGGAGGGACCCGTGTAGCAAAAGGCAGGATGTGTTCATCATTTGTGTCTGACGTCAGCCCACAGCAGCTTGGTGAAATGGAGAAAAAACTGGAGCACACCCAAAAGGAATCCCAGAAATACCGCGAGTCTAAAGCAAAGCTAGAAGTAACAGTTGATGAACTCAAGAAGAAGACGTCATCCATGGAACATGAATTAGAGAAGAACAAGATGGAAGTTAACGCACTAAAGGAACAGGAAAAGACTCTTAACGATCAAATAACTCACCTTAAACAAGAAGTAGCCAAGACCACACCCGATGAAGCACAGCTCAAACAACTGGAAAAACATGTTGAGAAATTCCAGAAAGAATGGAATAAAGCATCAACAGTGGCTTCTAAGATAGAGAATGAAGTACAAAGTTTACACAAGAAGATAATGGACATTGGTGGTGCTAAACTTAAAAGTCAACAGACTAGGCTTGACACTGCTATAAAAGCCATTGATGAGACACAGGGCCAAATCACTAAGGCTAGTGTAGCTATCAAGACATCACAAAGAAATATCAAGAAATCAGAGGATAAAGTAACATCGTTAGAGAAGGAAATACTGGAAAATGCTGAAAATATCAAGAAACTAGAAGTTGAGTTCAAATCCTTGGAAGAAAAGGCTAGAAAAGTACTAGAAGACTATGAAGACGCACAGAAACGTATGACAGAAATGGAGGCAGTACTTGCGAATACAAAGTCTGAGTACACTGCTGTAGAGGAAGAGGAAAACAAGTTTCGCAGTAAAGAGGTTGACATAAAGCATGAGCTTGAGAAACTAGAGACCATTTACAAAGAAAACCAGCAGAAAGTACGGCATTGGAACAAAGAGTTAAGTAAGCTGGCCTTACAGTCCATTGGTCTAACTGACCATCAAGAGGACTCCACCCTTCCAACACTTACCCCTGAAGACCTGGACAGTATTGACAAGGAAACGGTCATGTATGAAATCACTGTCCTGGAAGAAAAGCTGAACCAGATGAAACCAAACATGTCTGCTATTGCCGAGTATCGTAAAAAGGAAGAGGCGTACCTTGTACGTGTTGGTGAATTAGACCAAGTTACTTCAGAGCGCGATAACAAGCGACGTGAACATGAAGCATTGCGTAAAAAGAGACTTGATGAATTCATGGCAGGCTTTACCATCATTACTACCAAACTAAAAGAGATGTACCAGATGATTACGTTGGGTGGCGATGCCGAGCTTGAACTAGTTGACAGTCTGGATCCGTTTTCAGAGGGAATTGTATTCAGTGTTCGTCCACCCAAAAAGAGCTGGAAAAACATCTCGAACCTTTCTGGAGGAGAGAAGACTCTAAGTTCCCTCGCACTGGTATTTGCGCTTCATCACTTTAAACCCACACCTCTTTACGTCATGGATGAGATCGATGCTGCTCTGGATTTTAGAAATGTGTCTATTGTTGCTAACTACATCAAGGAGAGAACTAAGAATGCCCAGTTCATCATCATCAGTCTACGTAACAACATGTTTGAGTTAGCAGATCGCTTGATAGGGATCTACAAGACATACGACTGCACAAAGAGTGTTACGATTAACCCTAAACTTATTGCTCAACAGGGCTAG

Transcript

gene15673.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P50532	Structural maintenance of chromosomes protein 4 OS=Xenopus laevis OX=8355 GN=smc4 PE=1 SV=1
Q8CG47	Structural maintenance of chromosomes protein 4 OS=Mus musculus OX=10090 GN=Smc4 PE=1 SV=1
Q9NTJ3	Structural maintenance of chromosomes protein 4 OS=Homo sapiens OX=9606 GN=SMC4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002657 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06470 all species →	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan
PF02463 all species →	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024704 all species →	Family	Structural maintenance of chromosomes protein	Interproscan
IPR010935 all species →	Domain	SMCs flexible hinge	Interproscan
IPR036277 all species →	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR003395 all species →	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18937 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0051276 all species →	Biological Process	chromosome organization	Interproscan
GO:0000799 all species →	Cellular Component	condensin complex	Interproscan
GO:0007076 all species →	Biological Process	mitotic chromosome condensation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06675	SMC4; structural maintenance of chromosome 4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.