Gene detail

Detailed information of gene15684.t2 in Actinoscyphia liui

Genomic Location: chr4:34213398...34221204
NR annotation: XP_020902613.1, glycogenin-1 isoform X1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene15684.t2

CGAGTTTTGCTTTGGTTTCGTTCGTCTGTAGTTAAAATCTACAGGTTTTATTGAGCTTTGTGGCTCATTGATCAGCCTGTCTGCTGTGAGAGAACTACTAAGTTAAGATGGGTGAAAATCTGGTGGCAGATCAAGCGTATGTCAGTTTAGTTACGAATGATAACTACGCGAATGGAGCCCTTGTACTGGCCTACTCACTGCGTAGGGTAAATACGACCAGAAAACTGGTCCTTCTCGTTACTAATCAAGTCACTGCAGAGATGAGACAACAGCTTATTAGAGTGTGGGACCACATTGAAACCGTTAACCCTCTTGATAGCAGAGACGATGCCAACTTGGCACTACTAACACGACCGGAATTAGGAATCACTTTCACGAAGATAAGATGCTGGAATTTAACACAGTATACAAAATGTGTCTTCATGGATGCCGACACACTGGTGTTACAGAATTGTGATGAACTGTTTAATCGAAGAGAGCTGTCAGCTGTACCAGATATTGGATGGCCAGATTGTTTTAACTCTGGTGTATTCGTGTTTGAGCCATCAAGAGTAACGTATGAGGCACTCCTGCAATATGCTATTGACCATGGTAGTTTTGATGGTGGTGATCAGGGACTTTTGAACTCATTTTTCAGTAACTGGGCAACACATGATATCTCTACTCATTTATCGTTTGTATACAACATGAATTCCAATGCCAGCTACACTTATGCGCCGGCACATAAACAATTTGGCCGAGATGTGAAAATAGTGCACTTCATAGGGCCTTTTAAGCCATGGCACTGTTCATACTCTAGTGAAACTGGCAGTGCATGCATGCCGCCATACTCCAGTGGATCTCCACATGAGAGTAACTACCTACAACTATGGTGGGATATCTACATAACACATGTTCTGCCTGTCATGAAGCAACGCAATGCAGAAACTACATATACAGCCTTGTGCACTCAGCCAGAATGCCTCCGCAGTCATGACGATCAAAATCCTGCACCAGCTTACATACCTGAACCCAATCAGTTCTATTGGAAGTCCACAGAGAACATTACTGATGCAATAAGAACATACCCTGAGGACACCCACCAGCATACTGACGTACCCATCCATACTGATGACCAGCTGAACACCCACCAGCACACTGACGTACCCACCCACACTGATGACCAGCTGAACACCCACCAGCACACTGACGTACCCATCCATACTGATGACCAGCTGGACACCCACCATAGTCATAATGCTAGTGATGCACTGCTGCAATGCACGGAGGAATTCAATCCCAAATCATACTCACATATTGATACCAGTACTGTTATTCATCAAGTCATTGACCAGCTTACCTTGCTACAAATTCAGAGTGAGGATTTAGAAGAAAGTACGCTGTTTGCTGATCAACGTACAGCTTGGGAGAATGGCTCACCAGACTATACAGGGAAAGACAGATTTACCAATATTCAAGAGAAACTTGATGAAGCAATCGAAGGCGAAAGCTATCGGGATGCTGGCGATGTTCCAGTATTGGTTTAAAATGAATATTCACTTGCCTGTGCACCGTCTACAATCACTGCCAAAATTGTTGGCACAATTAGATAAATGACAGCATGCGCAATTAAAGTTTTGATAGAAATAGTGCCCTCCTCCCCTATATCAATGTTGCTACGATGAACTTGAGTTGTGGGCGCTTTGCGGGAACCAAAACTCACCTTTGCTCTACCTAAGCAACCAGCAACATTGATACAGGGGTAGGAGGTTCTCAAATAACAGGACTGATTGCAAAAAATGGGCAATAGTTCCTCTAAAGACATATCATGCCAAAACATAATGGCAATGGTTGTAGTTGCAAAAGCAACAGTGTGCCACAGACCAGTCTATTGTTAGATGATACTAAATGTTACAAATCAGAAATATTACAAAACCAGAGTCATAGACTGAGTTCTCCTGCAAGAGAGATTTGAAATGTATTGAATGATCAACATATATCATATTACTATCCAGGGGCCCGTTTCTCGAAAGCCCTGTAAACTTACTGGGCCCGGTAAGCCTTCTTTAAAAATCTGTATCTACAAAACAAAGTAGTTTCTAGACATGAAACTTTACATGAAGCTTAACTTTGTTCATATTAAAAACATGTGAAAAGAACAGCTCTGTAAACTATAAGTGATTCAGATTTTTGGGATGGCTTATCGGACCCGGTAAGTTTACGGTGCTTTCGAGAAACGGGCCCCAGGCACGTAGCCAGTATAGAGAAACTGCCTCAGTTAAAATTTCGTTTTTATTTAAATCTAAACCCTGGTGGTTTATGTAAACATTTTCTTTTATGATAATAACAAAAGTTTTGCCTCTGTAAAGATTTTGCTCTGGCTACGGGCCTGCTATCATTAATGACTGGAAACCATACTTACAGTTCCAAATAAAGTCCAGATACAGTGAAACCTCCCGTAAGCGGACACCCTTGTGACCAAGTTGTAAGTGTCCGCTTACGGGAGGTTAACAATGTAGTGTTTATATATTAGGAGAAATCATTGGGACCACTGGTACGGTTAGGTGTCCGCTTACGGGAGGTGTCCACTTACAGGAGGTGTCTGTTAGTGGAGGTTTGAGTATAAATAACAAATCCCTGACTGTTTGTTAGTATATAAAATGACTATGCAACAAACAGTAATAGAAATGAAGAAATTGCCATTCCAGAAATGGGAAGATTGTTTCTCTTTAGCAAGAGACTGACGGACGCAGTATGTACTATGAAGTAGTCATACATTTGATTTGCATGTACTGTGAAAATGGTGCTATTTATGTATTTCAATAATACTGTATAGAATCATGAGAATACATCAGATAGAAAAATGTTTCAGTCATTTTCACACTAGAAAGGACAATGCTTTGAGACAGATGTCTTAGATCTCAGCCAGACCAGTCATCATAGACTTAGTATAAAAACTGGTTGAACAAGAATTTGGATGTAAAAGTCGTAAGAAAAAGTTTGTAGCGAAAAATCATCCTCACGGACAAATCGACGGACAAAATCCGATGACTATTACATCCAAATTTGTGCTCCCATTTTTAGCTTTGTGTACATGTAAGTGTTTATATACCAAATAAAAAAGATTTAGAATGAGTGTGAAAAGATCATGACGCAGACAGACCATGCCATGACCCGTGTTGTGTATATAAAAATGTGTATAATATTCAGTGTTGTGTCCATGTCATGCCTTGTTTTTTTCAGTTATACGAAACCTACACGGGGAAATCAGACTTGAGTATACTTGGTTGACCATAAACAATATTGTATTTGAATTTAAATACTTTTGTCAATTTTAAAATTATGTTATTTTGTGTCAATATTTAAAGCACAAGAGAATACAAAACTTTGACAAAAATCTACACCAGCTGTCAGTGACTTGAATAAAAAAAACAAGGCCAAGATTTTGCATAAATATATTGTCACACTGAATGTTTGTTTTGTTATCATCTAATAGATTATTTTACAAGTTTGGTTATGTATAAAATATCTGGATTATAGATAGAGTCATTTTCATGAGTGGGATCGGTACCATCACGGTCGACAGTACTGTACCACGTCCCACTCATAATGAGTCTGTTGTATGTTGTTACAAGTTAACTTCATGTTTTTGGTGCATGGGATTGACAATAGTTATTGAATAGTCTTTACTATGAATGTTGTTATTCTGATTCTGATCTTTATAGTGGATATTTTTCAAATTAAATATAGATTTTATAGTTTAATAATTAAACTATAATTATTACTAATTACTAGTCATTAAGATTTAGAAAATGTGTATTAGAAAAATCACCATGAGAATATTACACTACGATTTTTTATTTTAAATAAATATATGTTGAAATGGTGAAAGAGTTCAAGTAATTTTCCCTTACTAGTATTAAAACCATAAATGTGACTTTGCAGTCTCGAATTTAAGAAATAACGATTTTTCATAAGTTTGAGTCTTGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15488	Glycogenin-2 OS=Homo sapiens OX=9606 GN=GYG2 PE=1 SV=2
P46976	Glycogenin-1 OS=Homo sapiens OX=9606 GN=GYG1 PE=1 SV=4
P13280	Glycogenin-1 OS=Oryctolagus cuniculus OX=9986 GN=GYG1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002906 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01501 all species →	Glyco_transf_8	Glycosyl transferase family 8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR002495 all species →	Family	Glycosyl transferase, family 8	Interproscan
IPR050587 all species →	Family	GNT1/Glycosyltransferase 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11183 all species →	GLYCOGENIN SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00750	GYG1, GYG2; glycogenin	EC:2.4.1.186	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.