Gene detail

Detailed information of gene15693.t1 in Actinoscyphia liui

Genomic Location: chr4:34278063...34280151
NR annotation: XP_031564483.1, DNA repair protein XRCC2-like [Actinia tenebrosa]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43543	DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1
Q9CX47	DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008996 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08423 all species →	Rad51	Rad51	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013632 all species →	Domain	DNA recombination and repair protein Rad51-like, C-terminal	Interproscan
IPR030547 all species →	Family	DNA repair protein XRCC2	Interproscan
IPR020588 all species →	Domain	DNA recombination and repair protein RecA-like, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46644 all species →	DNA REPAIR PROTEIN XRCC2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000400 all species →	Molecular Function	four-way junction DNA binding	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005657 all species →	Cellular Component	replication fork	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0033063 all species →	Cellular Component	Rad51B-Rad51C-Rad51D-XRCC2 complex	Interproscan
GO:0042148 all species →	Biological Process	DNA strand invasion	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10879	XRCC2; DNA-repair protein XRCC2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.