Gene detail

Detailed information of gene15885.t1 in Actinoscyphia liui

Genomic Location: chr4:36542968...36559582
NR annotation: KXJ05397.1, hypothetical protein AC249_AIPGENE13934, partial [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene15885.t1

ATGGCGGTCGAAACTGTGAGAGAGAAAGCTTTGTCCGACTACAAAAAGAAGCTTTTAGAGCACAGAGAGTTAGATGCAAGGCTGAAGGAAATGAGAGAACAGTTGAAAGAATTTACCAAAGACTATGACAAATCAGAGAATGACTTGAAAGCTTTACAGAGTGTTGGCCAGATTGTTGGTGAAGTCCTAAAACAACTTACTGAGGAAAAATTCATTGTAAAAGCAACTAATGGACCACGTTATGTTGTTGGTTGTAGAAGACAGGTTGATAAAGCCAAGCTAAAGCAAGGAACCAGAGTTGCACTGGACATGACAACATTAACAATAATGAGGTACTTACCTAGAGAGGTTGACCCACTAGTATATAACATGTCACATGAAGATCCTGGTAATATCAGGTACTCTGATGTTGGAGGACTAAGTGAACAGATACGAGAACTTAGAGAGGTTATAGAGCTTCCTCTAACAAACCCAGAACTTTTCCAACGTGTTGGGATATCACCACCTAAGGGTTGCCTTCTCTTTGGTCCTCCAGGTACTGGTAAAACACTGCTTGCTAGAGCTGTGGCCAGTCAACTTGACGCTAACTTCTTAAAGGTTGTATCAAGTGCCATTGTCGATAAATATATTGGTGAAAGTGCAAGACTTATACGTGAAATGTTTGGTTATGCCAGGGATCATGAACCTTGTATTATCTTTATGGATGAAATTGATGCAATTGATCTTGGTGAAGTACCTTTCATATTTGATTTACAAAAGGTTGATGATGGTTCAGGAATTGAGAATACTTTGGCGAAAAATAAGGCTTCGTGGCATAAGTCCTGTAGAAACAAATATAATAATACTGAGCTCAAGAGAGCTCAAAAACGCAAACAAGATGAGGATGAGAAGCAACTATCGCACAGTCCTTTGAAAGCTAGGAGGTCAAGTTCCTCTAGTTCTTTGACGAAGAGCTGTGAAGTCAGGTGTTTTTTCTGTGACAAAACTGACAGTATATCAAACCTTCGTGCTGCATCTACATTTGAAATTGATAGAAGAGTCCGTGAATGTGCAATAGAACTACAGGATGGCAAACTCCTAGCAAAGCTAGCTGCTGGGGATATGGTTGCTTTAGAGGCCAAGTACCATGTACATTGTCTTGTTGCATTGTACAATCGTAGAAGGCAAAGTACGACGTCACAATTTGATGAGTCCCAGGACACACGTTTACAAGGAATAGCCTTTGCTGAATTGATATGCTATATTGAAGAATTCTTTGAAGCATCTAATGCAAATGTCCCTGTTCTTAAGTTAGCAGATCTTGCAAAACTGTACATGGCAAAACTAGACGAGCTGGGAGTTGAAACAAGTCGTGTTAATACTACAAGGCTAAAGGAAAGAATACTTTTAGCATTCCCGGCCATGTCAGCACATTCACAAGGACGAGATATACTACTGGTTTTAGATCGTAACGTTGGAGACGCTATAAGGAATGCCAACAAACAAGATCCCGATGTCAACGCAATGTATCTAGCAAAAGCAGCAAAAATAGTGCGCAAAGAGATTTTGAAACACCATCAGTCCTTCAAAGGAACTTTTCCTCCTGATTGTCAAGACAGCTCTATCCCACCATCTCTGAAGGCTCTCATATATATGATTTTGAAAGGTCCAGGTTCCAGACAGACAGATATTGAAGAAGTCAACGTAAACCAAGCATCCCGTTCTATCTCACAGCTCATCATCTACAACACCACCATACGTCAAAGTAAAGCCTCTGCATCTGCTACACGCCACAACAGAGAAAGAGAAAGCCCACTTCCGATTTACGTTGGACTTAAGATTCATGGCCTGACAAGAGGACGCAATCTAATTGACACACTGTTTAACTTGGGATTGTGTATCTCATATGATAGAGTTCTTAGCATATCTACTGATGTTGCTAACGCTGTGTGTGAACGATTTGAAAGAGATGGCGTTGTTTGTCCTCCTATACTAAGGAATGGACTGTTTACCACGGCTGGTTATGATAATATTGACCACAACCCAAGTTCCACTACTGCACGTGACTCATTCCATGGAACCGCTATCTCACTTATCCAACACCCAACCGATGATGTTCCTGGGATTATTCGTGATACAAATGTTATAGACGGATCTCACCAACATGAGAGGAAAATTGCATCATTACCATCGCAATTCACTGATGTACAACCAATAGTCTTAGTAGAAGAAGACGTGTATGCTCCACCACTTACTGGACACGTGGATGCAGACTGTCACACTGACCCTCATTATGGATACAAGAAAGAAAGTCAATGGCTTCATAATGTCTTTGCGCTCCATGGAAAAGAGAACTTTGATTCAAATGATGCCATTTCTTGGGCTGCATTTCACGCATCCAACCAACCTCCGACACCACACAAACCCGCTATCACCTCATTGATGCCAATGTTTCTGGAAACCTCACATTCAGCGCCTATGATTCTGCATGGTATGAATATCATTCATTCTGCAGTGCAGCTTGTTAATCCGGGACAAGTTCCTGTCATTGCCATGGATCAGCCTCTTTTTGCCATTGCAAAAAGAATCCAGTGGAAGTGGCCGCAAACTCACGGAGAAAACAATTTTGTTATAATGTTTGGTGGTTTACATATTGAGATGGCATCGTTAAGAGCATTGGGTAAATGGCTAGACAAAAGTGGATGGACAACGGTGATGACGAATGCTGGTGTTGCATCTCCAGGCGTGGTCGACTCGTTTGTTAATGCTAGCCATATAACAAGAACAAGGAGATCACATTTACTAACCTCAGCAGCCCTGTACATCCTCCAGCAGCGCGCTTATGAGACGTACATCGAGAGAGCAGACGAAGAGACCCCTTTATCTTTTACAGATTGGAAAGATAAGCTATCTGAAAAGCGCCCGAACTTTCTTTATTGGTCTAGAGTGATGGAGCTACAACTTCTTTGTTTTCAATTAGTAAAAGCATTTAGAGTTGCTGACTTCAAACTGTATGTTGAATCTCTAGTCAAACTGATGCCATGGATGTTTGCTCTTGACCAAATCAATTATGCCAGATGGCTTCCTGTACATATCCGTGATATGCAAGAACTACAGTTAATCCATCCTGAAGTGTATAAAAGATTCGTCGAAGGGTCATTTGTGGTGCACAAAACAAAGAAACCATTTTCTGCAATGTCTCTAGATCAAGCACACGAACAAGAAAATGCTATCGTCAAAGGTGAAGGTGGAGCTGTAGGACTGACAGAGAATCCAAGTGCATTAAAACGTTGGATGGTTGCAGGCCCTGAGATTGCAAGAATGGTCCAAGAATTTGAGACAGCAGCAACTACCTCTGAAGACCACAATCTTTATCACCATGAGCAAGTGCATAGCCTCCAATTGTCATTTAGAAAGGATCTACAATCGGTAATCACCACCTTTGACGAGCTGGGAAATCCATTTATGGAGGAAGGTGAAGAACTGATGGCAGTTGACACCAAAGATGTTGCGAGCAATGACGTTGTTCAAACTGTCAAGAATGTTGTCAGAATCGGTCAGGAACAGTATAGGTCTTATGTAGACAACAGACTAACACAGAGAAAAACCCCAATAACAGACCCGTTAAAGAAGAATAAGTTGCCTTTATTTAACAGCACTCAAGACAAAGATCAACCAAGACACAAGACCAAAATTACTGAATTAAAGAATGATTGCTCGTTATTTTCAAGGCTTTACATTGCGTGTCAAAGTCGGGACGGAAAGCTGGACGAGTTTTTTCAATATGAAAATCAGCCATCGCCACCTTCTCTAGCAGACACGGGAGAGCTTAGAAAAGGTCAGAAGGCCGACCTTGTGAAGTGTTTAGAAACGTATCTTACTACATTGCCCAGCACAAGCCCACAAGTAGAGGTTGTCGTTCTGGATGGAGCTGTTGTGGTACAAATGCTAAGTCCTAAAACATCACGGACATTTCAAGAGTACATTGACACTGTATTCAAGCCTTATGTATTGAAGCAGCTTAAAGATGTAAGAAGAGTAGATATAATTTGGGACGTATACAAGCAAGAATCACTTAAGAAAGGTACAAGGGAGGCAAGGGGGAAAGGAACTCGTCGTAAAGTGTCACCATCTACCCCAATTCCCAGTAACTGGCATTCATTTTTGCGTGTAGATCAAAACAAGGTGGAACTGTTTCACCTTCTCTCAGAACAGGTGACTCAAACAGAAGATGAGGCATTAGGAAATGGCAAAGAATTATACAGCACCTATGAAGAGAATGTCCTTTCAAGAAGAAGTGATCTTTCTAATCTTATGCCATGCACACACGAGGAAGCGGACACCCGAATCATGCTTCATGTGTATGATGCATCACTCTGTGGAGACCGACGGATTATGATAAGAACAATTGACACTGATGTCATCGTACTAGCTATATCGATCTTTCACAACATCTGTGTGGATGAACTATGGGTTGCTTTTGGCACAGGGAAACATTTCAGATATCTTCCCATCCATGAAATTGCCACAAAGTTAGGTAGCGATAAATGCAAAGCATTGCCACTATTTCATGCCATAACCGGATGTGACACAGGTGGAAGACGATTTTCAGAGGGAACATCTGCTGACAGAGAAATTCAGAGAACGCTTATGGAGCTCTTAAATCAGATGGATGGATTTGACGTTCTTGGACAGGTGAAAATGATCATGGCTACCAATCGTCCCGACACATTAGATCCTGCTCTCCTCCGTCCTGGTCGACTTGACAGGAAAATAGAAATCCCACTTCCAAATGAGCAAGCAAGAATGGACATTCTAAAAATACACTCGTCAACGATTACAAAGCATGGTGAAATTGATTATGAGGCTATTGTCAAGCTCTCAGATGGTTTCAATGGTGCTGATTTAAGAAATGTCTGTACAGAAGCAGGAATGTTCGCTATTCGCTCTGAAAGAGAGTATGTCATAGAAGAAGACTTTATGAAAGCTGTGCGCAAAGTTGGTGAAAACAAAAAGCTAGAGTCCAAACTAGACTACAAACCTATATAA

Transcript

gene15885.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KIW6	26S proteasome regulatory subunit 10B OS=Bos taurus OX=9913 GN=PSMC6 PE=2 SV=1
P62333	26S proteasome regulatory subunit 10B OS=Homo sapiens OX=9606 GN=PSMC6 PE=1 SV=1
P62335	26S proteasome regulatory subunit 10B OS=Ictidomys tridecemlineatus OX=43179 GN=PSMC6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000032 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16450 all species →	Prot_ATP_ID_OB_C	Proteasomal ATPase OB C-terminal domain	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR032501 all species →	Domain	Proteasomal ATPase, second OB domain	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47018 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene15885.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.