Gene detail

Detailed information of gene15946.t1 in Actinoscyphia liui

Genomic Location: chr4:37188879...37209829
NR annotation: XP_028517203.1, uncharacterized protein LOC110246743 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene15946.t1

ATGTCGGCCACGGTTACCTCAGAAGGGGTGCCCCCAGGATGGAAAAAGCTTGTTATGGAAAGAAAATCCGGTAAAACAAAGGGGGCTATTGATGTTTATCTAATCAATCCTGAAGGTCGCCGAATTCGCTCCCAAAATGATCTCCAGCGGTACCTCGAGCAATCAGAGTCCGCTCATAAAATTGATGACTTTGATTTCAGTAAAGCTCTCAAGATAACTCCAGACAAGCAAGAGCAACCGAAGATCTTACAAAAGGAGAAATCAGAGGCATCAAATCTATCAAAATCGTCGGCGTCGGATGAGCATGAGGGAGAGCACAGCTCTCCGGCTCCGATGGAGTTGCCCGTAACAACCACCCTCGAGTCCAGCGTTGAGACAACGAAATCAGGAAGAAAGATCCGCCCATCTTGTAAACTAAATCCTGCACTGTATTTCTCCGCAACGAATGAACACACAGTTTGTGATCGAAACTTTGTGATCTCCAAAAACTGGAGAAAGGGCATTGATGGTAAAACTCGCTTCATTGCTAAGTCAGGGGCACCACCAGGTTGGAAGAGAGTGGTGCATAAAAGAATGCATGGGAAGGGAAAGGGGAAATGTGACGTCTACATGGTCGGCCCAGAGGGGGTCCTGCTCCGGTCCCGACCAGAGATCAAATCATTCATACTTGCAAATGGCCTGGATTTGTCAGTCAGTGACTTTGACATGACTTCACCAGTTTTTCCTCTGGCCGTTGAACACCCCAAATCGAAATCAAAAATAGAACGCCAAAGAAGAAAGAGGGTAGCTAGTCAACCTTCAGGACAAGTACCCAAAAAGAGACGTTACGCATTAAGAAAAAGGTCTGGAAAGGTGAACAGTGAAGAAATAAGAAAAGAGAAGGGGGAACGACCAGTACAAGAAGTTACCAAAAGAGCAAGTTTACGATCCTTTACAAATATCAAAGATCAACCAGCTAATATTGATCAACCTTCAAGACAAGTACCCAAAAAGAGACGTCGTGCATCTAGTAAAAGGTCTGGAAAGCTGAACAGTCAAGAAAAAAGAACAAAGAAGAAGGAACCAGTGCAAGAAATTACCAAAAGAGCAAGTGAGAAATCCTTTACCAATCTCATTGACCAACCAGCTAATATTGATGAAAGAATTGTTGATAAGACTCGAGAAAGGAGGCCACCAAGCAAGAGATCTGGAATGGTAAAAGATCAACAAACAAGAAATATGAGATGGGGGCCAATAAAAGAAAGTACCAATAAATCAAGTAAAAAAACTTTTAGAAATGACCGACCAGCCAACACGAATGAAAGAATTATCCATAAAATTCAAGGAGGGATACCAAAGGGCTGGACGAAAGTCTTGGTAGAAAGAAAAAGTGGTATCTTGAAGGGAAGGTGTGATGTTTACGTTTTCAGTCCAGATGACATTAAGTTCCGATCTCGACCAGAGCTTAAAAGATTCCTTCGACAGACAAATTCTGAGCTGTCAATTGATGACTTTGACATGACGAATCGCCCATTGAAAAGAAAATCTAAACAGGTAAAACACATTAAAGTGGTGAAAAGGATTCACCCTTCTATTTTGGGTAATAAAAAATTAAGAAGGTCTAAGAGGACACCATCTCAAGAAGCATCAGATTCCATCATGAGAGGGACTACAAGCGATGACGCAAAGTCTCCCACTGATCAACAAGACAATGACACCAGCATGACAGACGACTTAAACATCAGTGCTAATGAAAATTCATTCCACTCCGATGTTGAAAAGTCACAGCAGAGAAAAAAGGGTGCAATGCCAGATTCGAAAGAAAGAATCTCTAAGAGGAGGAAGGTTACCAGTGATGAGACACCAGTATCAGATTCCATCATGAGAGGGACAACAAGCAATGATGCAAAGTCTCCCACTAAACAACAAGACAATGATGCCAGCATGTCCGACAACTACTTCAGTGCTGATGAGAATTCATTCCACTGTGATGACGAAAACAAGTCAGGACAGAGAAACGAGGGTGAAATCCCAGGTGAGCAAGGTGATGCCAGCACAGAAAGTGAAACTCCAAGTCAAGAAGAAGCTACAATGCCTGGTAAAAATAGCAAGAGTGAAAAGAAGGATTTAAACAGTGTTCAGTCATCGGTCAGTCCATACTTCTCAGATTCTGAATCACTGCCAAATCCACCCAAAATAGGAGATAAAGATCCTCACAAAAAGAAATGGACTCCTCCCAAATCACCTTTCAAGCTAGTTCAAGAAACACTGTTTCATGATCCATGGAAACTATTGATTTCTTCGATATTTTTGAACAGAACAACTGGAGAAAAGGCTATTCCTATAATGTGGGAATTCTTCAGACGATACCCTAATGCTGAAGAAACGCGTAATGCTAAACCAAAGCCCATAGCTGAGCTAATGAAACCTCTAGGATTATACGACAAGAGAGCCAAGACAATCATCCGCTTCTCAGATGAATTCCTGTCCAGAGACTGGACCTATGCTGACACCTTGTATGGAATAGGAAAATATGGCAGTGATTCCTACAGGATCTTCTGTCTTGGTGATTGGAAAGATGTACAGCCCAATGACCATATGCTGAACAGAAAAAAGTTAGTAACAATTAAAGCGTCGACAATCTCTACAATCTTCTTTAGTATGCATTTCATCCATTTTTGTCACGTTCTGGCGGCCATTTTGTTTCTTACTTCACAAAACAACGCAGTTGTTACATGTACGAAAGAAATACACGAATCCACAAAGTTTGGCCGTCGTTTCCTCGACAAACGAGACCCGTCCGAGGCCACCAAGAAAGCACCCAACCTCTTTGCATGCACAGAACTTTGCAGCCAGACACCAGGATGTAAGAGTTCAAATTACAACTTGTTTGATGGCGATTGTGAGCTGAATGAAAAAGACCATACAGGCTACAAGAAATATCTTGTGGAAGCTGAAGGATTTATCTACTTTAAAAACCCTAAGCCAGAGCCAAAAAAGAAAGAAGTGACATATAAGACATGCGGCAAACTGAAGAAGATGAATCCAGCGTCACCCAGTGGAAACTACGAACTTGATGTGAACGGCACAACACAATCTGTCTACTGTGACATGGACAAGTTTGGTGGTGGATGGTCCCTTGTTGTGTCAATCAGCGGATTAAATACCCAACATACATTGCGAACCGAGAATAATTGCTTCAACTCGACCCTGTGTGTACCGCTGGCCACTGGAACTCTCGTCGCACGAAAATTCGCAGACTCTGATATTCGCTTGCTGGCATCATATGAAGGAACGTTTCGCGTCGATGTGACAAGTGCATCATCCACACGTTATACCGGGTTTTTCCTGTTCTCCCAAGGATCGCAGGTTTTTGACGCTGGATGCAAGAGTTATAGATGTCCAAGGATTATTGCATCTCACGTGTATCCGTACGCCTGGGAGTCTAATTGTAACGGCATTGAAAAGGGATATCAAATTCCAGTTCACAGCAACTGTTACGGAGTTTTTGATGATTATGACAATGGTGAATGCGGTTCCAATTGGTATACTAGCAAATACAATGCCGGCGAAAGAGTTCTCTACACGTACTGCCGTAGCAATGGCATGCACGCTGGATTGCAAGGCAATATGTATGTCAGTATGCATTTCATCCATTTTTGTCACGTTCTGGCGGCCATTTTGTTTCTTACTTCACAAAACAACGCAGTTGTTACATGTACGAAAGAAATACACGAATCCACAAAGTTTGGCCGTCGTTTCCTCGACAAACGAGACTCGTCCGAGCCCACCAAGAAAGCACCCAACCTCTTTGCATGCACAGAACTTTGCAGCCAGACACTAGGATGTAAGAGTTCAAATTACAACTTGTTTGATGGCGATTGTGAGCTGAATGAAAAAGACCATACAGGCTACAAGAAATATCTTGTGGAAGCTGAGGGATTTATCTACTTTAAAAACCCTAAGCCAAAGCCAGAGCCAAAAAAGAAGGAAGTGAAATATAAGACATGTGGCAAACTGAAGAAGATGAATCCAGCGTCACCCAGTGGAAACTACGAACTTGATGTGAACGGCACAACACAATCTGTCTACTGTGACATGGACAAGTTTGGTGGTGGATGGTCCCTTGTTGTGTCAATCAGCGGATCAAATACCCAACATGCATTGCGAACCGAGAATAATTGCTTCAACTCGACCCTGTGTGTACCGCTGGCCACTGGAACTCTCGTCGCACGAAAATTCGCAGACTCTGATATTCGCTTGTTGGCATCATATGAAGGAACGTTTCGCGTCGATGTGACAAGTGCATCATCCACACGTTATACCGGGTTTTTCCGGTTCTCCCAAGGATCGCAGGTTTTTGACTCTGGATGCAAGAGTTATGGGTAA

Transcript

gene15946.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95243	Methyl-CpG-binding domain protein 4 OS=Homo sapiens OX=9606 GN=MBD4 PE=1 SV=1
Q9Z2D7	Methyl-CpG-binding domain protein 4 OS=Mus musculus OX=10090 GN=Mbd4 PE=1 SV=1
Q0IGK1	Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana OX=3702 GN=MBD4L PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007511 (this species only) · gene tree & orthology
Transcription factor family	MBD · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00730 all species →	HhH-GPD	HhH-GPD superfamily base excision DNA repair protein	Domain	Interproscan
PF00024 all species →	PAN_1	PAN domain	Domain	Interproscan
PF01429 all species →	MBD	Methyl-CpG binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003265 all species →	Domain	HhH-GPD domain	Interproscan
IPR003609 all species →	Domain	PAN/Apple domain	Interproscan
IPR001739 all species →	Domain	Methyl-CpG DNA binding	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR016177 all species →	Homologous_superfamily	DNA-binding domain superfamily	Interproscan
IPR012314 all species →	Domain	Peptidase M12B, GON-ADAMTSs	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR045138 all species →	Family	Methyl-CpG binding protein MeCP2/MBD4	Interproscan
IPR011257 all species →	Homologous_superfamily	DNA glycosylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15074 all species →	METHYL-CPG-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene15946.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.