Detailed information of gene15997.t1 in Actinoscyphia liui

Genomic Location: chr4:37679469...37686537
NR annotation: XP_020913483.1, protein SMG9 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9H0W8Nonsense-mediated mRNA decay factor SMG9 OS=Homo sapiens OX=9606 GN=SMG9 PE=1 SV=1
Q2YDD2Nonsense-mediated mRNA decay factor SMG9 OS=Bos taurus OX=9913 GN=SMG9 PE=2 SV=1
Q05AW9Nonsense-mediated mRNA decay factor SMG9 OS=Xenopus laevis OX=8355 GN=smg9 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005654 (this species only)

 Pfam domain
No Pfam domain signature was detected for gene15997.t1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR039177
all species →		FamilyNonsense-mediated mRNA decay factor SMG9Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14270
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000184
all species →		Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K18735SMG9; protein SMG9-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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