Gene detail

Detailed information of gene16130.t2 in Actinoscyphia liui

Genomic Location: chr4:40052689...40068430
NR annotation: XP_020902583.1, protein O-mannosyl-transferase TMTC4 isoform X1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene16130.t2

ATGCGGGCTAGAGCAAGGCCATCGGGAATAGGCCCCAAGAGGAAGACGCTCCGGGAAGCTGATGATTTTGACAAAGAGAGCCGTTTTAATGGCCAGTGTGTGGAAGACACGCAAGAGAAAAGGGACCATTCTGCAACGTACCAAGATATCCCTCTACCAATTTTCTCTCCAAGAACTGCTTCATTTATCATAGCTACAATTTCTGCTTTATGCTACTGGAATTCCTGCTATGGGGACTTCGTTTTCGACGATTCGGAAGCCATCGAGAACAATAAAGACCTTCTTCCCGAGAGCTCATTACTGGCCCTATTTGTGCATGATTTCTGGGGAGGAAATTTAGCAGCTAATGACTCACATAAAAGCTATCGACCATTAACTGTTCTGACGTTTCGCCTGAATTACTGGCTTTCTGGAGGGCTGAATCCTTGGGGGTTTCACCTTGTTAATGTGGTCCTACATGCCATTGTATCAGTTCTCTCTCTACGGGTATTTGATGAGGTGTTCGAGAATTACACTCCCGCCACCACGAAGGTTTCCCGCGAGGGCATTCTATGCGCTCTGATATTTGCGGTTCATCCGATTCATACAGAAAGCGTTGCTGGTATTGTTGGGCGTGCTGATCTTCTTTGTGCATTGTGTTTCTTTATCTCATTTTTGATGTATGTAAAATGTTGCAAATTATACAACTCTTACCATTTCCAGTCTGCTCTGGGATACTTGTTATTAAGTGTTCTGCTGTGCAGTTTTGCCATGCTCTTCAAAGAACAAGGAATTACTGTTCTTGGTTTATGCTGTGCATATGATGTCATAGTGGTCTGCAAAATAGATTTTATTCAATTAATTAAGAGTGTGTTTAAAAGCAAGAAACATGCTTCTTCTAATGGGAACAACGACACCAATATATCAATAATTGGAGGGCTGTTCTACAGGCAGGCAGTGTTGGTAATGGTTGGGGTCACACTACTCCTGGGTCGTTGGAATGTCATGGGTTCAACAACACCTCGTTTTCAGGTGTCAGACAATCCAGCTTCATTTGAAAAATCATTTATAGTTAGGGTTATCAATTATAACTACATTTATGCAGTAAACCTGTGGATACTTGCATGTCCATGGTGGCTCTGCTTTGACTGGTCGATGGGTTGTATTCCGCTTATCAAGAGTCCTACTGATCCAAGGATACTAGCAGTACTTCTAATGTGGGGTGTGATCATGGCTCTTCTAGGATACTGTCTACTAGGGGTACCATCCCGTAACAGAAGGATATGCACCATGGCGCTGGCTTTCCTAGTGGTGCCTTTTCTCCCAGCATCTAATGTATTCTTCAGAGTTGGGTTTGTAGTAGCAGAACGAGTACTATATTTATCCAGTGTTGGTAGTTGTATCCTAGTAGTTCTTGGGGTCACAGCACTTAGCAGAAAAACTCATTTTAGAAAGTTTGTTGTTTTTGGTATCTTCACAATGGTGGGTTGTTTTGCTATGTGGACCATTAAACGAAACGGCCAATGGGTCAATGAAGACTCCTTGTTCACTTCTGGTGAGACTGTGTGTCCCCTGAATGCAAAGGTTCATTACAACATCGGTAAAGTACGGTCCAACCAGCATAAAGAGGAAGAGGCATTGCGTTACTACAGACAGGCAGTCAGGCTGAATCCAACGTATCACGATGCCTTGAACAACTTAGGAAATCTTTTAAAGGAAATGGGAGAGATCACAGAAGCTGAGGTGCTTCTTGAACGAGCTGTGAAATCAAGTGACTTAAGCATAAGCGCTGCAGACACGCCAAGTTGTGTTTCATGGTGGCCCAAGCATAAGCGCCATACATTTGCTGCTGGTTGGATGAACCTGGGAACAGTGAAGGCAGCCATGAACAAGATGGAGGAGTCAGAAAGATGTTATAAAAACGCCATCAGATTCAGAAAGAAGTTCCCAGATGCGTATTTTAACCTCGGGAATTTGTACATAGATTGGGAGAAAAGAGAAGAGGCTATAACTGCATTCAAGAACGCTGTCAGGCTTAAGAAGAGTCATGTTGGAGCCTGGTTAAATCATATCTTGCTGCTTGATAAGTCAGAAAGGAGAGCCGAGGGCATAGCACTCGCTAGAGAGGCATTGAAGAACATCCCACAAGACGGCTCTATTCACTTTAATCTAGGGAACATGCTGGGACAAGAGAGCAAGTTTGACGAAGCAGAAAAGCACTTTTTAAAAGCGATAAAAATCAATCCAGACGTTGCCGAAGTTCAAGGAAATCTAGGTGTTCTTTACCATCGATGGGGAAAACTAGAAGAAGCCGAGAAGCAGTACCACAAGGCATTAGAACTAGACCCACTTGGATCAAACATACAAGAAAATGTCGAAAAACTAGAACGAGCGAAACGAAAACGACAAAAACACAGATAA

Transcript

gene16130.t2

CAGAATGCAATGCGAGATAGTTTACAAAACATCCCTCAGGGGAGGGGACTGGATCATTTTGTTACACAACATTTTTCCTTTTGACTGGAATTTAGTTAGTTTTGTGTATATATTGTGTATTATTTTAAAAATAGTGTTAAAAGAATTGAAGGAGTTGTTCTGTTGATTTTTATTGAGAGAAAACAAGGCTTTATTTTGAGAGAAGAGGTGCTAATTTGCTAAGCCCCTCCCCCAGTGGTTGGTCTTTTTAGTAACATAAGCTCGTGTGCCTTTTTTTCGCGCATAAGTTTGAATCATGGCAGAGAGAAGCGGGTTTACTATTACATTGCTCTGATCTTCAAAATCTACAATGCGGGCTAGAGCAAGGCCATCGGGAATAGGCCCCAAGAGGAAGACGCTCCGGGAAGCTGATGATTTTGACAAAGAGAGCCGTTTTAATGGCCAGTGTGTGGAAGACACGCAAGAGAAAAGGGACCATTCTGCAACGTACCAAGATATCCCTCTACCAATTTTCTCTCCAAGAACTGCTTCATTTATCATAGCTACAATTTCTGCTTTATGCTACTGGAATTCCTGCTATGGGGACTTCGTTTTCGACGATTCGGAAGCCATCGAGAACAATAAAGACCTTCTTCCCGAGAGCTCATTACTGGCCCTATTTGTGCATGATTTCTGGGGAGGAAATTTAGCAGCTAATGACTCACATAAAAGCTATCGACCATTAACTGTTCTGACGTTTCGCCTGAATTACTGGCTTTCTGGAGGGCTGAATCCTTGGGGGTTTCACCTTGTTAATGTGGTCCTACATGCCATTGTATCAGTTCTCTCTCTACGGGTATTTGATGAGGTGTTCGAGAATTACACTCCCGCCACCACGAAGGTTTCCCGCGAGGGCATTCTATGCGCTCTGATATTTGCGGTTCATCCGATTCATACAGAAAGCGTTGCTGGTATTGTTGGGCGTGCTGATCTTCTTTGTGCATTGTGTTTCTTTATCTCATTTTTGATGTATGTAAAATGTTGCAAATTATACAACTCTTACCATTTCCAGTCTGCTCTGGGATACTTGTTATTAAGTGTTCTGCTGTGCAGTTTTGCCATGCTCTTCAAAGAACAAGGAATTACTGTTCTTGGTTTATGCTGTGCATATGATGTCATAGTGGTCTGCAAAATAGATTTTATTCAATTAATTAAGAGTGTGTTTAAAAGCAAGAAACATGCTTCTTCTAATGGGAACAACGACACCAATATATCAATAATTGGAGGGCTGTTCTACAGGCAGGCAGTGTTGGTAATGGTTGGGGTCACACTACTCCTGGGTCGTTGGAATGTCATGGGTTCAACAACACCTCGTTTTCAGGTGTCAGACAATCCAGCTTCATTTGAAAAATCATTTATAGTTAGGGTTATCAATTATAACTACATTTATGCAGTAAACCTGTGGATACTTGCATGTCCATGGTGGCTCTGCTTTGACTGGTCGATGGGTTGTATTCCGCTTATCAAGAGTCCTACTGATCCAAGGATACTAGCAGTACTTCTAATGTGGGGTGTGATCATGGCTCTTCTAGGATACTGTCTACTAGGGGTACCATCCCGTAACAGAAGGATATGCACCATGGCGCTGGCTTTCCTAGTGGTGCCTTTTCTCCCAGCATCTAATGTATTCTTCAGAGTTGGGTTTGTAGTAGCAGAACGAGTACTATATTTATCCAGTGTTGGTAGTTGTATCCTAGTAGTTCTTGGGGTCACAGCACTTAGCAGAAAAACTCATTTTAGAAAGTTTGTTGTTTTTGGTATCTTCACAATGGTGGGTTGTTTTGCTATGTGGACCATTAAACGAAACGGCCAATGGGTCAATGAAGACTCCTTGTTCACTTCTGGTGAGACTGTGTGTCCCCTGAATGCAAAGGTTCATTACAACATCGGTAAAGTACGGTCCAACCAGCATAAAGAGGAAGAGGCATTGCGTTACTACAGACAGGCAGTCAGGCTGAATCCAACGTATCACGATGCCTTGAACAACTTAGGAAATCTTTTAAAGGAAATGGGAGAGATCACAGAAGCTGAGGTGCTTCTTGAACGAGCTGTGAAATCAAGTGACTTAAGCATAAGCGCTGCAGACACGCCAAGTTGTGTTTCATGGTGGCCCAAGCATAAGCGCCATACATTTGCTGCTGGTTGGATGAACCTGGGAACAGTGAAGGCAGCCATGAACAAGATGGAGGAGTCAGAAAGATGTTATAAAAACGCCATCAGATTCAGAAAGAAGTTCCCAGATGCGTATTTTAACCTCGGGAATTTGTACATAGATTGGGAGAAAAGAGAAGAGGCTATAACTGCATTCAAGAACGCTGTCAGGCTTAAGAAGAGTCATGTTGGAGCCTGGTTAAATCATATCTTGCTGCTTGATAAGTCAGAAAGGAGAGCCGAGGGCATAGCACTCGCTAGAGAGGCATTGAAGAACATCCCACAAGACGGCTCTATTCACTTTAATCTAGGGAACATGCTGGGACAAGAGAGCAAGTTTGACGAAGCAGAAAAGCACTTTTTAAAAGCGATAAAAATCAATCCAGACGTTGCCGAAGTTCAAGGAAATCTAGGTGTTCTTTACCATCGATGGGGAAAACTAGAAGAAGCCGAGAAGCAGTACCACAAGGCATTAGAACTAGACCCACTTGGATCAAACATACAAGAAAATGTCGAAAAACTAGAACGAGCGAAACGAAAACGACAAAAACACAGATAACGGTAGTAGTTAGAAAAACTTAGAACATTTTAGCAAATTACGAAATATTTAAATAATGTATTTAATGGCAACAAGTCTCTCGAGGAGGAGAAAGATGTTGTACAGCATAGTGGACATCACATAGCAGAAGTAGCCCAAGTATTAGGTTCTCTCTTGCCCCACCCTCTCCCCTCTTCGTGTGATTCGTCTTTGGAAAGGCATTGGATGATATCCACCGTCCGTGCCTTTTCACTTGAAAGCGGTCTTCCAAGGGACGGATGTTGCACCCTCTACCCCCTCCCTCCATCGGTGCTCCGTCCCACTAGTGTTCAAAGCTACACAGACCGAGGTAGACGGATTAGAGGGAAGTTGAAACAAAGATGTGAGAATCACGACGATGGGATTCGAACCGCGTACCTGTCTACTGGACCACTAAGCCGGAGGGGGGAGGGGTAGTGTCAAGAGAGAGCCTGATACTCGGGTCTAGATGGTAGTTTAAACGATTTATTAACATATTCATTTGCTCGACATTCATAGAACGAGATTTGAGGCCCCGACACATGGTGATTAGTACTGCACACAATGGATACATTGTAGGGTGTGGTCTACCTCTTAAATTATTGTTACATTGCGGGGGTATAGCATCTATGGCCTCTATGGATAACAGTTTTTACAATGTGAGAATTTTCAGTGAAAAATACAACTATGAAGAAAAAAGTGAAACAAATCTTAATTTATTGCTTTTCACTTTGGACGGAAGTGTTTTTTTTTTTCATTCGAATTACATCACACTTAAAAGCCCATAGCGATGTTCACCGTGACGTAAACTTTTGTCATTCATGTGCCAACCAAAGATCGATTGGCTGTTCTAACAAAGCAACTTGTGAAAAGTTTTTGTGAAACTGGTTGGCACATTAACATTACAATGTTTTTGTTTGTAAATGGTGAGCATTGCTATAGCATTCCAACTGCGACAATTTTGCGCAATGTTGATTTTTTTTTTTTTTTGCGTTGTGTGTCGGGGCCTTGTAGAATGAATTCATGAACAAATGACACAAAATATTTAAGTGAAATATTTATGTAATGAAAAGAAACGTTACTATGTACCACTTTAAGTAACTCCCAATCTAGTTAGTAAGGATATAGATTAGAAATGTTTCTCATGAAAAAGGGTTTTAATTCTCAGGAGGGAATAAACCCCTTTAGTTTGGGCGTAAACCATATTAATGTCTCTTCTCAAGCGTTAACGGTAAAGAAAGAAATAATACTCACGTGATCTGAAATGGGAAAACATTACGCTCACACTAAAAGGGTTTACTGCAAGGAATCTGTTGTACAAGTCAGGTGCTCCTTAAAATGATGTAACTTTTATTCTTTTCCAACCGAGGAAGGTAAACAATTCCTTACAATTTCTTAAACCTTTTAAAATTTAAACCGGATATTTTAAAATACAAATTTTAAAAACTGCGAAAGTTGTGTCTTTTAGTAGCTGTGTCCCCCTGGGGCCTCCTCGCAGGCCACTTTTTTGGTACCTGAAAGGAGCGGAACTCAGAAAGCCCACCAATCACAGCTCATCTCGTTTATGATGCAATCCATGGAATTGTTTGAGAATATTTTTACGTTTCTCAAGGTCGTCGACTTTTCGTGGGTGAACTTGACCAGCAATGAGTCGTTCCAGTCTCTCTATCTCGTGACCAATCACGTGCGCTCCTTCTGTTATCACTCGCCCCATGACTACCGCGTAGTAATTCGCGTACTCCTTTGCATCATGGGTAATAGATTTAGCTTTGACTTGTCTCAAGATGTGTTCGCGTCGTTCCCAATCCTTCATGAACTGAAGTGCGAGTTCGTCAAATTCTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5T4D3	Protein O-mannosyl-transferase TMTC4 OS=Homo sapiens OX=9606 GN=TMTC4 PE=1 SV=2
Q8BG19	Protein O-mannosyl-transferase TMTC4 OS=Mus musculus OX=10090 GN=Tmtc4 PE=2 SV=1
Q3UV71	Protein O-mannosyl-transferase TMTC1 OS=Mus musculus OX=10090 GN=Tmtc1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000831 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13414 all species →	TPR_11	TPR repeat	Repeat	Interproscan
PF13374 all species →	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF08409 all species →	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013618 all species →	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan
IPR052346 all species →	Family	Protein O-mannosyl-transferase TMTC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44227 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000030 all species →	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23424	TMTC; protein O-mannosyl-transferase	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.