Gene detail

Detailed information of gene16135.t2 in Actinoscyphia liui

Genomic Location: chr4:40103881...40144310
NR annotation: XP_020902577.1, rho guanine nucleotide exchange factor 7 isoform X4 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene16135.t2

ATGGCAGAGAGAGCACAGCACTTCATTGACTGGTTGATCTCTCTGGGGCTGCTGCTACCAGACGATGATCAATATGGCGAAAATCCCGACAAGGTGCTCGCCGAAAAACTCCAAAATGGTTCTTTTCTGTGTCATTTGGTAAACATCCTGAAACCAGGAGTCGTCGAGAAGATCCACGAACCGCCGACCACCGAGGAAGAAAACCTCTTTAACTTAGAGGCTTTTGTGAATGCTTGCCGAGAACTGGGGATTCCAACAGAAGAGGTTCCGTCCCTGGAGGACCTGGAAAGCGAAGGAGGAAGTGAAAAACTTTTGCGGACTTTAGAAAGCCTTGAAAAGTTTGCTAACGGTTATGGGTTTCCGTCAGTTACATCCAAGCCACATGTGCTAACACTACCAAATACTGACAACACTGAAGGGGACCCTCTGACTACTGGCCCACACAGCAAAGAGATGACAGACTATGGAGGTGGCGGAGTCCATCTTGTCAAGGCTACTTTCCCTTTTGAAGGCACTGACGATGACGAGATCTGTTTTGTAAAGGGAGACATCTTGGAAGTCACTAAGTTTGTAGATGGTGGTTGGTGGGAAGGTACAATAAATGGCAAATATGGATGGTTTCCTAGCAATTATGTCAAAGAAATATCTTCAAGTCCAGAATTACCTGTTACACCCACTACTCCCTCTCCTGATGCACTGTCAGCTAACAAGAGAGACAGCGTCAGGGTCTATCATAACCTGGTATGGTATAGTACACATGATGATGATGATGATGATGGTGATGATGATGATGCGGATGATGGTGATGATGATGATAATGATGACAATGATGCTGATGATGATGATGATGATCATAGTGAGAATGATAATGGTGGAGGTGGTGGCAAAGCAATAATGGTTGTTCAAAATATACTGGATACAGAGAGAGCACATGTCAGTGAACTTCAGGCTTTGCTACAAAATTATTTGAAACCCCTTCAGTTTTCTAATGTCCTTTCTCCAAGAGATCTCAAGGTTCTTTGTGGAAACTTTGAAGAACTGGTTAAATTTCAACAAAGTTTACATGGAATCTTAGATGACTGTGCACATCAGCCTTTAAGTATACAGCGAATGGCTGCAAATTTTCTACAAATCGCACCTCAGATGAAAGAACTATATTTAACGTATTGTGCCAATCATCCCAGAGCCGTGGAAATCCTCACAAGAAATAGCGATGACCTCTCGGCATTTATTGAAAGTAAGGGGGCTCCAGCCCCTGGGATTTTAACGCTGACTACAAGTTTAAGCAAGCCATTCCGCCATCTGGACAAATATCCGACTCTACTTCTTGAGCTTGAAAGACATTTAGAGGAAGGACATATGGACAAACTGGACACTAAAAAGGCCATTGCCATCTTTCAAAACATCAAGACAAGCTGTAATGACATGCGTAAAAAGAAAGAAACTGAACTAGAGATTCTCACTGGAGACATTGAAGGCCTGGATAAAGAGGAGCTAGAAAAATGTGGAGACGTCATTTTGGTCTCACAGTTTTTAATTCATGGCAATGAAGGGGAAGTGAAAGATAGGTACTTCTTGCTGTTTCCATCATGTCTTATCTTTCTTTATGTCAGTGCAAAGCTTGATCGGTTCTGCTTTGAGAAAAAGTATGATATATCAAGAGTGAATGCTCGAACTCTAGAAGACACTGAAGGCATTCTAAATGCTTTTGAAGTACGAGTCAATGGAGAAACATTGAAAGTATCAACTAACCATGCATCAGAGAAAGCAGCTTGGTTGGAGACCATGTCAGACCTGTTAGGACAAGAATTCCACCATTCCACACCCACACCTAAGCACAGTCCTAAGACATTTGACAAACTACCCTGGGACTCACGGGCCAATGGCAAGCCAGAGAAAACAAGTGACTCCAGTGGATCCTCTCCCCCAGGAACTGGTTTACAAAGGAGATCCAATAGTGCATCTGTTACAATGTCACAGCCGTCGTCAGAGATTCTACGATCTATGTCCACTTCCCACTCTGCAGCCACTGACATGACATCCCTTCACTCTACAAGCCACAGTTCAAGTATATCCAAGAGATGGGACTTCTCGAAACTCAGACCTACACCGCCACTTAAACCTTCTTATGCACTCATGGCAAAAGAGCATGATACATCCATGGGTCGTTCTGTCAAGGGTCTTTTACACTCTACCAAGAAAAAGCAAGGTCGTTCAAAAAGTGAACCCGTAGAGGATGACAGGCATTATTCAACAACCTCCTCATCAGGCGGCAGTCATCTCCTAGAAGAAGACATGTTAATACTAAGAGTCATAGAGTCCTACTGTACAAGCGCAAGGGCCAGACATACACTGAACTCCGAGGACGTTATCCACGAAAGTACAAGTGGCTTAGATGATGACTCTAGGGACGATGAAACCTCTGATGATGAACGGAGAGAAAGGAATCCTACAAGCCCAATAGCACCTGAAGTCCCACCTCATACCACCAGAACTATGTCAACGTCTAGTTTACGAAGTGATTGGAAAAGAAAGTCTAAAAAGAAGCAAAACAGGGATGGTCTTGATTACAACTGCTTAAAAAAGACAGTAGAGCATTTACAATATGAAACAATGTCCTTACGAGAAAGTCTAGCAGAAGAACAAATGGCAAGAAGAAAAATGGAAAAATTTATCCGATCATCACTAAAAGGAATTGTACCTGATTTAAAATGGGAAGAATTCAAAGATGAAATATAA

Transcript

gene16135.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14155	Rho guanine nucleotide exchange factor 7 OS=Homo sapiens OX=9606 GN=ARHGEF7 PE=1 SV=2
Q9ES28	Rho guanine nucleotide exchange factor 7 OS=Mus musculus OX=10090 GN=Arhgef7 PE=1 SV=2
Q5ZLR6	Rho guanine nucleotide exchange factor 6 OS=Gallus gallus OX=9031 GN=ARHGEF6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001570 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF16614 all species →	RhoGEF67_u2	Unstructured region two on RhoGEF 6 and 7	Disordered	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46026 all species →	RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13710	ARHGEF7, PIXB; Rho guanine nucleotide exchange factor 7	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.