Gene detail

Detailed information of gene16194.t1 in Actinoscyphia liui

Genomic Location: chr4:40816217...40830351
NR annotation: XP_028516696.1, hemicentin-1 isoform X1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene16194.t1

ATGTTACTTCTGCCTCGAGTTTCTGCAGCAGTTCGATTCACTCAAATACCTCCCAGTAAACTGTACGTAGTGAAAGGAGGGACTGCTAGGTTTGTGTGGGACTACCAGCTTGATGGAGGCACTAAACTTGATTCATCACCAGGATGGTACTTTTATGACCCTGCTATTAAACGAATAGGTTACATAGACAAATATGATGGATGGACGATTGACTCAAACACTTGTCCAGCTCGGTTACGAAGTCCTACAGTACGAGTACGTACAGAGTCCAAAGCTACTTTGGTCATCACTAGTGTAACCACTGCTGATAATGGAGTGTATGGGTGTCAACTGGTATTATATAGTAGTGGATCAGCAGTTATAAGTAAAGTACAGCTTATCGTTACAGAAGCACCGTCTTTCACAGTACGTCCAAACCCATTATTAGCAATCAATGAACACTCACACTTGAGAATCAGATGTTCAGCGGTTGGTCCACCAACACCCAATGTCACGTGGGTGCAAGTACATGGTGTTACCAAGGTTACCATAACTCAAGGTGTAGGCAGTGCTACACTAAGTATACCGAGTATTAAAAGGGATCAGAATGGAACGTACGAGTGTCAAGCAACAAACAACCCAAACCAGAGTCCAGTTACTACACAAACAGTTGTTGTTGTATATTACAAGCCAATGGTTGACAAAGCCTCCTCCACTAGTACAGTTAGTTCGTGGAAGGAAAATACAATAACTCTAAAGTGTAAGGTTGCCAGTGGAATTCCTTCTCCAGACATCACGTGGTACAAACCCAACGGTGACGTCATCCCTTGCAGTGATTGCAGTAGGACTTACAGCAGTCACGTGACTATAGTGACAAGACAAGACAGTGGTGACTATGGACTTTATAGATGCATAGCAACCAATGTCCTTGGTAGTGATCAACACTACATCAATGTTACTCAGCTGTTTCCACCAGGATCTCCCAACTTTACTGTAAATGATATCAAAGAGTCATCAGCAACTGTCAGGTGGACAAGACCAATGTATGATGGTGGTAGACCAATTATTGGCTACAAGGTGGAAATTATCTCAGCGAGCCTCTATATCAATGCATCAGACATTCATAAGTCTATCAGTGGTCTGATAAAGAACACAAAGTATCAAGTGAAGTTATACGCTAGGAATGTTGCAGGATATGGGGATGCGTTCAGCAAGGTTTTCAACACTACAGAACAAGGTAGCACGGATTCTTCATCCTCGTCAGAGGATTCTCAAAAAGGCAATGGTACTACAGCAGTTGGTGTGTGTGCAGCTTTCTTGGCATTGTCTTTGCTGTTCAACATGCTGTTTGTGGCGTTGTACATTTGGAAGAACGCGAAGACAGCAAACTCACAATCGAGACAGAACACCGGTTCAATTTATGAAAACCAAGTTGAGATGAATAAAGCTTCATCACAATCTGCTGCAACACCAGATTATCCACCACCATGTACTGAGTACGAATCTGTTCAGCCAACTCGTGCACAACCACCCAACACGACAGCCAACTACGAAATCCCAGACAACAGGCAGACCAACCCAGCCACAAAAACATCCCAACAAGTTGCTCCACCAGGAATGTACGAACCTCTTCGTTCCAGACCAGTGGACGACGGCAATGGACGTCCTACATACGAACCAAAATATTCCGTTTGTGACTTCTCCGCAAGGATACGAGAGCCAACTAACTGGTTGATAACAGACTTTATTGATTTCAACGAAGCAAAAGGCATCTTTATTACCATTAAATATTCCATAAGGAAATGCAAAAATGGTTCTTCTTATTGCAAAGAAAACTTTAAACTTTATGCTGCTCAAACAACCAAGTCTGCGTCAAAACCGGCTCCTCCAAATAGCTTCCAAGAAATAGCGGTTGCCAAACCAACAATCATTCCAGACAGACATACAGGAGTGGGAGATTCCAATGTAATGCATGTGTCTATTGTAGCCAAACTTGATGGCTTTTATCTCGCATTTTATGACCAAGGAGCATGTTTGACATTACACAATATTCAAGTTACGTACAACTTTTGCCCTGAAAAACTGAGTTTCAACTTCATGACATTTCCTAAAACTGCATCACCTGCAGATGATTCTTTAGCAAATCAAGTTCATGCTGAAGGGAGGTGCTCTGATCCTAATGCCAGGAACACCTCTACATTGACAGCAGTTTGTACAAGTAATGGAACATGGAAACTTGATTCAGATATGAAATGTATGTGCAAAGCGGGATTCGAATATTCAGAGAAGACTACGAAGCACTGCAAAGATATTGCGATCATCTCAACAACAACCGTTAATATCCCATCCAAGTCTCCCTCGCCAAGCTCCAAATCAACCCTTAATATGCCGTCCAAGTCTCCACCACTAAGCTCTACATGTACTACAGTAGTTGGTGTGTGTGCAGCTTTCTTGGCATTGTCTTTGCTGTTCAACATACTGCTTGTGGCGTTGTACATTTGGAAGAACGCGAAGAGAGCAAACTCACAATCGAGACAGAAGACCGGTTCAATTTATGAAAACCAAGTTGAGATGAATACAGCTTCATCACAATCTGCTGCAACACCACATTATCCACCACCATGTACTGAGTACGAATCTGTTCAGCCAACTCGTGCACAACCACAACCACCCAACACAACAGCCAACTACGAAATCCCAGACAACAGGCAGACCAGTCAAGACCCCAGTCATTACCAAAGCCTCAACCCAGCCACAAAAACATCCAAACAAGTTGCTCCACCAGGAATGTACGAACCTCTTCGATCCAGACCAGTGGACGGCGACGGCAGTGAACGTCCCACATACGAACCGTTACGTAACCGTCGTACTGAGTTTCCTGCGTAA

Transcript

gene16194.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91735	Ephrin type-B receptor 3 OS=Xenopus laevis OX=8355 GN=ephb3 PE=2 SV=1
Q07498	Ephrin type-B receptor 3 (Fragment) OS=Gallus gallus OX=9031 GN=EPHB3 PE=2 SV=1
P54753	Ephrin type-B receptor 3 OS=Homo sapiens OX=9606 GN=EPHB3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000023 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF01404 all species →	Ephrin_lbd	Ephrin receptor ligand binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001090 all species →	Domain	Ephrin receptor ligand binding domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR050449 all species →	Family	Ephrin receptor tyrosine kinases	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46877 all species →	EPH RECEPTOR A5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005005 all species →	Molecular Function	transmembrane-ephrin receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0048013 all species →	Biological Process	ephrin receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene16194.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.