Gene detail

Detailed information of gene16201.t2 in Actinoscyphia liui

Genomic Location: chr4:40967426...40983332
NR annotation: XP_020896521.1, proline-, glutamic acid- and leucine-rich protein 1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene16201.t2

Transcript

gene16201.t2

ATGGCGGCCCACACTGCAGTTTTAGTCAGTTCGTATTTAGACGAGAAAACCTCCACAAATTTATGTATTTCAACATTATTAGAATCCATAACAGAAAGACAAAGTCTCCAAGGAAGTGGATGCAGTAAACAATGGATTGCAAAGTTAAATGGCTTTTTGAATTCTAACTCTGACAGATGGTTGGGAATTAGCTTACTTGGGACAACATTATGGCAGTGTGATACAGAAGTCTTTACTGCTAACTGTCTGTCTTGGATGAAGATTATTCAACACATTCTAGAGTCTCCAAAGTCATCACTGAGTTTGATTCAATGCTCTGTCAAGGTGTTAGAGGATCTCATGAAATATACAATACAGTTTTCTGACTTAATGAGAAATGCAGCAAATTCCAGTGTGCCATCAATAATCTCAGCACTTCTATCACTCAAAGACAAGGATGTTGTTTGCTCCTTGAGTGGTGTTTGTACTTGTTTGAAGTTTTTCCCTGGGCCTGCTTCTAGTTTTAAGACTAAAATAGAAAACTGTGTAACAACTTGTCTAGACACTTCTGATACAAATATAAGAAATATAAGTACACAGTGTTTTGCACTTGTTGCTGGGTGCAACAGTAACACATCAGATGACAAGATGAGGAAGAGCTGGGAGTTTCAGTGGAGTAGAGTTCTTGGTGCAATTCATGCCACCCTTGACAATCTACCTGGCTATGATATCACAGCAAATGAAACCAAAATTAATGAGGCGATACCAATGGAAATGATTGTGGATGAAGAGCCCAAGAAAACCAACACCTGTACTGCTAGACTGAGGTCTTTATTACAATGTCTGGAAGCAATGATAAGACAGGGAACCAGAAAAGTCAATACAGTACCATTAAATGATACCATCGCACTTCTTGAGAGGTTATTGGCAGTAAATGAGAATACTTTGAAAGGAAGTGTATCACTAGACGTGGTTCTCTTGAAGGGCTGTTTGCCTTTAATCCATCTGAGCTCAGTAGAGCTGTTATGCTCTATGATGCAAAGATGTGGCAGTCTTTTACTACCAGTTGTTAGCAGGATATCTAATATGCTGGTTAATGAACTGTCTTGGACATCAGATGTTCAAGCAATCTCAGCTTCGCAGTGTGGCTCATTCAAACCATACAGGTACAGTGTAGATGTGTATGACATTACCATACAGGTACAGTGTATGACATTACCATACAGGTACAGTGTACAGTGTATGACATTACCATACAGGTACAGTGTACAGTGTATGACATTACCATACAGCAAACTTCGCTGTGCTGTATATAACTGCTTTATTCACTGGGGACAACTCAATGCCAGCTGTCAACCAAATGTCATTAAAGATGTGATTCGTAACATCCTGAAAGAGATCAAAGTCCCAACAAACAGCCAAACAAAGCTTAATGCTCCATTACAAGATTTAAATAAACAGAAACCATCCAAGGGAAAGAAGAGGAAATTACAAACTTTGGAACAGCTAAGCACGAATAACAAAAAGGCTGATCCATTGAGTAACGCCTTAGTCTGCCACACAGCCTTGTCTGCTCTCTTTGGTGTTTTGATAAATTGTGGAGAATTTGTGTCAAAAGAGATATTTCAGGAAGTACAAGTGATGTTGTTGGACCTTGTCAACCAATTCCAGTCTTGTTTACCTGGTAACTTACCACCACCTTATAGCAGCCCTGATTGTCGCAAGGAAGTTTATCACAGTTTAATTGCATGTGTCTTGGCACGCCCTTCTGGTGTGCCTACTGCAATCAATTGTGTTATAAGGTGCCTTAAGCAAGGGTTGCAAGACTCTCACTACAAGGTGTCCATTTACTGCAGAGAAGCGTTGCAGGTTGTCACTGCACTAATACATCCTGTAGTTCCTTCTCTTGATGTCGCAGTGCAACCTATGGTTTACTCAACACAACACAGTACAGAAAGCAGAACATCACAGAATGGCTCATTAGAGGATGACAACTCTTTATACACTATGGATGGTGAATTACCTCTTCAAACACCGTCTGTTAGCTTGGAAGGTGTACAATCCAGCATAAGAAATTCGTTTGCTGAGAAGGTATTTTCTGGAGGGGTGAAAAATGGCATTGAGAATAGAGCCGAAGGTCATAGTCTTGAGTTAAGGGGAAGTGATGACATAGGTCCTGCAAATGAAGAAGATGGTCAGCAAGGAGATAGAACTGGAGATAATAATGTCATGGTTGATTCTGAACAAACGAACAACAATATTCATGAAAGTCCTGGCAAGAATATCACTGATGTTACTGATTATACCAGCAGTTTTGCTGAGGACAAGTTTATAAATATTGAGTCACAGCAGACAGTTGATACTCCAGTGACAATGTGTGATAATGATGATGATGATAACAATGAAAATGATGATAATGATGAAGACACAGCCCCTATACCATCCAAGAAGCTTAAAACAGATAATCAGGATCATCATACTATTGATGACCAACAAATGACAGCTGATGTCATTGCAAGCTCTAAAGAACAAGATACAAATGATACTCAGGATATGGGCGATGTCAATGAAATGCTAGCATCCTTTGTGAATTCATCTCCTGATTCAGACAGCGAATGATTAATAATGACATTAAATTACTACTACTGTCTGACTGTAAAGCAGGATTGTCAAAAACCACTTTCCCTCCACTGGCCCTACAAACAATGGATTGAAGTCGAGGTTGGGCTTGACAAAATACAGAGAATGTATGAAAACTGGAACTCCAACCTTGACTTGGATCCATGGTTCACGACCATCGAAGCGTAATGTGGGAAAGGTCTATTGTACTAGCAGGAACAGACAGCTATGGAGGACCCCTAGAGGTGCTTTGATAAATCGGTCAAATTTACCAATGAATTGCAGCCAGTAAAAATACAAAAGTGTTTAGCTCACTATGTTACCAGTTACGATAACATTTTGATAACCCTGCTGTAGCGGTCTACATCTATATCCGTAAAAGCCTGTGAGTCCCTAAGGGCGTCTTTCCTACATCCGTAAAAGCCTGTGAGTCCCTAAGGGCGTCTTTTCTACATCCGTAAAAGCCTGTCAGTCCCTAAGGGCGTCTTTTCTACATCCGTAAAAGCCTGTGAGTCCCTATGGGCGTCTTTTCTACATCCGTAAAAGCCTGTGAGTCCCTAAGGGCGTCTTTTCTACATCCGTAAAAGCCTGTGAGGCCCTAAGGGCGTCTTTTCTACATCCGTAAAAGCCTGTGAGTCCCTAAGGGCGTCTTTTCTACATCCGTAAAAGCCTGTGAGGCCCTAAGGGCGTCTTTTCTTTAGCTGTACAGATCTGCAGTCACTGTTCGTGTACATTTATAGAATAATGATGAAAGCAATTAGTGGTAATTAAGAGTGGATTTCAAAGTCCCTCTATTTCAAACTTGAACTCAAGAGGCATGCATCAGCACCCAACCACAAGGGTAGTCCAGCTAAAGTGTTCCTATAGAGCAGATTTCGTATGAGTGGGAAACCTACGGCACGGAGTTACGGTCACGGTACGGAATCAACGTCATCTATTCAACCAATCACAGCGCACAAAATCACTGCTCGTCCAATCAGAATGCTCGGACACGGTACCATCACGGTACCATCACTGACCGTACCGTAAGCACTTCCCACTCATACGAAATCTGCTCTAATCTCCTCGTTTTGTTGTTGGTCGATATCTCGGGTGGAAGGGGTGGAAGTGTGGGAACATTTTGTCGGTGGTTCCAGTCAACGGGGTTTTCGAGATATCCGGAAAATGCTCCGGATTTGGACTCAAAGTTCGAGATATCCGTTGCTCGAGATAAGGGATCACCACTGTAGAAATATGTTATCAAAGAATTTTTAATTTATCAAAGAAGTTGCGTTACTTGATAATTATATATATAGTCTACTGTGTCAACTGTGAACAATACGGCATTAATGTAAATGTAAGGTAACATTGCTAAGCATTGACCAGAATCAGCAGACGATCACTTAACTTTGTCAAAAAACAGCCCATTACTAACAAAAATTTGCCAAGAAAAAAGTGCTGCGGAAATTCCTGAGCACATTTATTTTTCGTCAAAAAATAGCCTAATACTAACGAAAATTTGCCGAGAAAAAGTGCTGCGGACATTCTTGAGCACTTTTTTTTTCGTCAAAAAATAGCGCAATACTAACGAAAATTTGCCGAGAAAAAGTGCTGCGGACATTCCTGAGCACTTTTTTTTCGTCAAAAAATAGCCTAATACTAACAAAAATTTGCCGAGAAAGTGCGGCTTCAGCCCGGCGAATTGTGTTCTGAGACTTCTGACGTGCTAAAATGATTTTCCTTTGCTTTATTACATATAATTTTTCGTAGAAAAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005112 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08167 all species →	RIX1	rRNA processing/ribosome biogenesis	Repeat	Interproscan
PF08166 all species →	PELP1_HEAT	PELP1, middle domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR012583 all species →	Domain	Pre-rRNA-processing protein RIX1, N-terminal	Interproscan
IPR012980 all species →	Domain	PELP1, middle domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34105 all species →	PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16913	PELP1, MNAR; proline-, glutamic acid- and leucine-rich protein 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.