Gene detail

Detailed information of gene16433.t2 in Actinoscyphia liui

Genomic Location: chr4:43869188...43882534
NR annotation: XP_020904447.1, N-acetylneuraminate lyase [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DCJ9	N-acetylneuraminate lyase OS=Mus musculus OX=10090 GN=Npl PE=1 SV=1
Q66H59	N-acetylneuraminate lyase OS=Rattus norvegicus OX=10116 GN=Npl PE=2 SV=1
Q9BXD5	N-acetylneuraminate lyase OS=Homo sapiens OX=9606 GN=NPL PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008629 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00701 all species →	DHDPS	Dihydrodipicolinate synthetase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002220 all species →	Family	DapA-like	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12128 all species →	DIHYDRODIPICOLINATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008747 all species →	Molecular Function	N-acetylneuraminate lyase activity	Interproscan
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan
GO:0019262 all species →	Biological Process	N-acetylneuraminate catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01639	E4.1.3.3, nanA, NPL; N-acetylneuraminate lyase	EC:4.1.3.3	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.