Gene detail

Detailed information of gene16554.t1 in Actinoscyphia liui

Genomic Location: chr4:46693177...46695913
NR annotation: XP_020906085.1, uncharacterized protein LOC110244227 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q97EK7	Large ribosomal subunit protein bL17 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W) OX=272562 GN=rplQ PE=3 SV=1
B8E1G1	Large ribosomal subunit protein bL17 OS=Dictyoglomus turgidum (strain DSM 6724 / Z-1310) OX=515635 GN=rplQ PE=3 SV=1
A7FZ43	Large ribosomal subunit protein bL17 OS=Clostridium botulinum (strain ATCC 19397 / Type A) OX=441770 GN=rplQ PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004864 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01196 all species →	Ribosomal_L17	Ribosomal protein L17	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036373 all species →	Homologous_superfamily	Large ribosomal subunit protein bL17 superfamily	Interproscan
IPR000456 all species →	Family	Large ribosomal subunit protein bL17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14413 all species →	RIBOSOMAL PROTEIN L17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02879	RP-L17, MRPL17, rplQ; large subunit ribosomal protein L17	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.