Gene detail

Detailed information of gene16645.t3 in Actinoscyphia liui

Genomic Location: chr4:48736408...48745476
NR annotation: XP_020902357.1, soma ferritin isoform X1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene16645.t3

ATGTTTACGAGAACATTTGATGCAACGCTTCATCTTGACGAGTCTCTAAAGGTGGGTACAAAACTTGGAAATTGCCGAAATTGATCAAGTTTACATAGCTATAGATATTTCGAGGTTTTTTTTGTCTGCGCATGCGTAAAATGCCATACATACACAAAGACCCTCTGATAGATAGATAAACTTTATTTCAAGAGGGATAAAACGTATTAACTTACAAGAGTTATCTAACATACGGCCCTCAACAAAAATACATAAATTAAAGCAAATATATATATATATATATATAGATCAGTACAACTAAGAAGAAATCTACAATTATAGCAAAAAAGGTCTTCAAGATGGTTAGGACTGGTTAATTTATTAAGGAAGAAATTACGGAGCCTTAATTTAAGAGCGGCTACTCTAGAGGCTAGGGCCTCAGCAGTAGGTGCTGAAGGACAAACAAGCTGCTTAATAGATGAATCAAGCGCATTGAAAAGAGTAGAACCGCTGAAAAGAAAAGTGCGTTTACCAAAGTCAGTATGAGGTCGAGGCAACTTAAGCTCGAGTACGATATGGACGACAGTCGGACAGAAAAGTAAACCTGTGTTTAAAGCAGAGAGGGGGCATTTGGATTAATCAGAATGTTGAAAAGCAAGAGAAGCTTCCTTAACTTAATAACTGAAGGTCAAAAACAGGAATCCACTTAAGCTTAGAAAAAAGTAAAACAGAAGGAGTAAGGAGATCAGCATTAAAGATAATTCGAGCTGCACGCTTTTGAAGACGAAGAATTCTGAGTAATTTAAGAGCGTTTTAGAACAGTTTCCCCAAGCAACAGAGCAGTAGATGATATTAGTGTGAATACATGAATTATAGAAACGAATGGCACGCGTATATATCCCGCGCCATCCCGCGCTAATTTAAATACCACGAATAACAAACAAGATGGCGAAGTTCTATCTCATATATTTATTAATTAATTTGTCTATATGAATATATGCAACTCAGAAGTCATGGCCTTTATTTTAACAATGCTGAAGGCATGCTGCAGTTAAACAAGTATTTACGATGCATTGATGAGTGTGATATTGCAAGGTGACGGAGGTCCAGACATGACAAGCCTAAACTGACAATGGCTGCCATCTTCGCCTTATACATGCACTTTGAACATTCATAGCAGGAGCTACACATTTTTTGAAGACATTTATTGTGATGAATGGAATGACTATTGAATAATCTTCGCCTCCATAACAGTAAGCAACTTGGGGGTCGGCAGAAATCGAAAGATAATTTCACTTAAATGCTTGAAGTCCACATTTCTGCTCGTCTCGAATCCAGTAAATGCTGCAATGCAAAACAGTGGAAACAAGTTTGAATTACTTAACAACTAATTTTTCTGTAAAGTTTATTCTCTCATTTGTACTTTCAAAGACTTACAATAAGTTAAGGACGAAGATATGAGAGAACCATGGTTTCGAGAAGTACATAAAACAACAATTCCGTCATTACACCGAGTATAGGGTGAGAAGAAACTATTTTGAAAATCTGACAGCTATACGTTTTTGAACATAACGCCCCTACTTAAATATATTAGGGGGGGGGGGGGGGGGGGGTAGAAAAAAAGCGAAATTACGGCATAAATCACTTCAAAATCAATTCCGGCACAATACGGCAAAGGTTTGTAAACAGCTTTTAGCGATAAAAGAAGAAAATCGTAAAAATCTATGAGCCTGGGCTGCCTGTGGTTTTAGTATAAGCACAGTGATAGTCTTGCAACACACAAGAAATGAGCGAAATCTATTTCTTGAGCCAGAGTCACCAGACCGGTCTTAGAGATACAGCCTTTTAATACCTGCTAAACCCGCTACCTGCTAAATTGCTAGATGCAACGTACGTTACCACCAGCCCAGTGGCAATGGCTAAAGACACACCCTAATGGTGGGTCATAGTATATAGAATATGTACTATAGTACAATCATGTGTACGATTCTCATTGGCTGTTATAACCTACAACAAAGCTTGACTATAGTCATATGATTGCGAAACTAATACTTAAGGCTCAGACACACGGTGCAACATTGTGCGCAACATTGTGCGCAATATTGCACGCAACAGAATTTTAGGGGGATGACACATGCTGCAACTTTTCTTGCAACTGTTGGGCGCATTTCGCTGTTACAAAGCTCTTTGTTGACCGCAAAATCAAAATGGCAACATTAAATATTTTAAAACGAACAGCCACAGCGATCGTAATTTCTTTAGTGAAATTTATTGCACGGAATGTTGCAGAAGTACACCATGATTCAACTCCTGAAATGTTGCGCGCAATGTTGCGCGCAACAAATTTCAGGGGGTGACACACAGCTGCAACAAGCGTGTTGCGTGCAATGTTGCGCGCAATGTTGCACCGTGTGTCTGAGCCTTTAGATTATTAGGTCATCCCTGTTGCTTGACCTGTACTAACCCCAGCTAGGCCTGGCTCTGTCTGCCTTGGTCTAGACTCATATTAATCAGAGATTAATTATCACTACATTTCTTTGCATTAGTTTTGTTTTTAGTGCAACGATGTCTTTAAAAAACATTTGATGAAACTTCTAGCTTCTTTTAAAACTTTGGATGATTTTTCCCTCAAAATTTTCCCTCCACGTTTTTTTATGGGTTAATCCTGACATCCTGATTCAGTTCGAAAACGACGTCATAATCACGTGACTTTTTGTTAAATTAAAAAGTGCCATAAATATACAGTATGAACTTATTGGATACCCTATTGAAGTTTGGTAGCGTTTACAATGGAAAAGGAACAAAAAAAGTTTTATATGGTATCAGATAGATCTATCAGATAACACCTTGATATTTCCGGTCACGTGACACCCTTAAGTTACCTTGTATATCTTGCTACTATCATATATTTTTGTGGGCTACAAGAAAATCACTGGTAGCATTTGCCATCTTGAGTGGTAAGAAAAAGTCACTATGTTACGCTTTGTTAATAATTAGACGGAGTTAGAAATTATTAACAAAGTGTAACGCGAGTAGCGAAAGTTGTAATAGGAGAGGGGGCGTGTATCGTACTGACTACAATTGCAACATTGGATCGTATGTCTTTTTACGATCCATGAGTACAAGCATATACAATAGTACATAAGGAGGGCTCCTGACGGGAACAACAAGTCAACAATGCAATATTATTCCAATAACCTGCCCTATATACCTAGGGGGGCGTCGCCCGTATTTTTATTATTCATTTTTTTTATTATAACAAAAAGAACCATAAGAATCTTTTCAGACATTATTTTCCTGCTTGATGTCACGTGCATAATACGGTAAGTGCCTATATTTAGCGCCAAGCATGACAAAGCACTTCTGCGCCATCTCACGCGCCCAACACGTGAATATGCAATGCCCTGTGCCAGCCAATAGAACCGCGTAATTTATCCTTACGTGTCACGTGAGCTTCTATTATAACCAAAGTACGCAACCCGTGAATTCAGTCTGAGTTTCTGCTTCAACAGTGTTTGAACAGAAATAAAGTTGCCTTAAGAAACTTTATTCAAGTTTACCGGATTTTCAACCTAATTTACCAACATCCAAGATGTCTTTGTGCCGTCAGAAGTATCACGAAGATTGCGAGGCTGGCGTTAACAAGCAAATCAACCTTGAGTTGTACGCTAGTTATGCCTACTTGTCCATGGCCTACCATTTCGACCGCGATGATGTGGCCCTTGCTGGATTCCACAAGTACTTCAAGAAGGCCTCCGATGAAGAACGCGAACACGCTGAAAAGTTTATGAAGTTCCAAAACCAGCGTGGAGGCCGTGTTGTGCTTCAAGACATCAAGAAGCCTGAGTGTGACGAATGGGGTACTGGCCTAGACTCAATGCAGACTGCACTTGACCTTGAGAAGCATGTCAATCAAGCTCTCTTTGATCTTCATGCTGTTGCTGAGAAGCATGGTGATTCCCAGATGTGTGACTTCCTAGAAGGCAACTTCCTGAAGGAACAAGTTGAGGGCATCAAAGAACTTTCTGGTTATATCACGAATCTTAAGCGGATGATGGACTTCATTGAGTCTAATTACTTGCATGAGCAAGTTGAGGCCATCAAAGAGCTGGCTGGCCATGTTACCAACCTCAATCGTGTTGGCCCAGGACTGGGAGAATACCAGTTTGACAAGGAAACCCTCAATGACTAAATGATGGTACTTAGTACTTGACACTAACAACCTGGCTATGACACAACTGCATAGAGCTGAAATTATTGATGATTTGTTACTTTTTATTGGCATTTACTGTTTTTAGTTTTGTTAGCTGAAAAGCACTTGCAAATCTGATCTTGAATAAAAGGCTGCACATGTACTGATGTCTCCATTGATGTCTTGTGTAGTTAACATTAATTTTAGTTTTCCATTTACCATTAATCTTTTTGAAATTATAATTTATTGGAAAATTTTCATTTCACATAATATATTTTTTGTTTTCAAGGAATTCAAATGTTAGAGTGATTTTACTTAACCCATGAAACAAAAACCATTGGTTAGTGTGTAATAGTCTAGAGACCCAAAAGAAAATAAGATGTAATGGTGTCTATTAGTCTATTAACCATTTCACAGGCTAAGTAAAACCCCTCCAAACTTAAAGCGCCTTCCATAATTATTCAACCCAGACAACTCCAGATCTATGTCTGATGATTTCTCTCAAAAATTGGAAATGTCATATGAGGCCCTGTTAGGGGGGATCTGAATAATCCATAATCCTGGGTAAATTTTGGAAATAATCCGTTCTCAATTTTGTAAACAAATATCCCTAAATAAAATTTTAAATAATTTTTTGATTTTAAAATGCAAAAAATCTGTCATCTTTAAATTTAGTGGCCAATAATCTATATCCCTTCTCTAAAAACCCCTAAACTGCTCAGGGCCTCTCATATGAGTGGCCGGGAAACCTATGGCACGGACAGTACAGAAAATAAGCCCTTGGAAACATCATTATTATGGATCAATACAGTGGCGATAATTGTGCCATATTCTTTCCCTTGTATGAAATCTAATCAATCCAATGAATCATCCAAATGTAGAACATCCCTTGCAATCCTCTAAAATGACTAGGTGTACATTGGAGGTGTTATACTTGTGGTCCATACTGTGTATTAAAGGTTTCGTCGCGTAGGTGGTTAGAATGTCCCTGTAGATCCAATCGTCATTCAGGAAGGGTTGCATTCATTTGGCAAATCTGGTGACATGTCAGGGATGCCCGGCATACAACCTGGTCCAAATGGTGCTCCAGCACC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42577	Soma ferritin OS=Lymnaea stagnalis OX=6523 PE=2 SV=2
P85838	Ferritin, heavy subunit OS=Trematomus bernacchii OX=40690 PE=1 SV=1
P85837	Ferritin, heavy subunit OS=Trematomus newnesi OX=35730 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001052 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00210 all species →	Ferritin	Ferritin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009040 all species →	Domain	Ferritin-like diiron domain	Interproscan
IPR008331 all species →	Domain	Ferritin/DPS protein domain	Interproscan
IPR009078 all species →	Homologous_superfamily	Ferritin-like superfamily	Interproscan
IPR012347 all species →	Homologous_superfamily	Ferritin-like	Interproscan
IPR014034 all species →	Conserved_site	Ferritin, conserved site	Interproscan
IPR001519 all species →	Family	Ferritin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11431 all species →	FERRITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008199 all species →	Molecular Function	ferric iron binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006826 all species →	Biological Process	iron ion transport	Interproscan
GO:0006879 all species →	Biological Process	intracellular iron ion homeostasis	Interproscan
GO:0006880 all species →	Biological Process	intracellular sequestering of iron ion	Interproscan
GO:0008198 all species →	Molecular Function	ferrous iron binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00522	FTH1; ferritin heavy chain	EC:1.16.3.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.