Genomic Location: chr4:49585541...49592028
NR annotation: XP_020896525.1, thymidylate kinase [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families
| CDS |
| gene16693.t1 |
| Transcript |
| gene16693.t1 |
| Protein |
| gene16693.t1 |
| UniProt accession | Description |
|---|---|
| Q3B752 | Thymidylate kinase OS=Danio rerio OX=7955 GN=dtymk PE=2 SV=1 |
| Q54GN2 | Thymidylate kinase OS=Dictyostelium discoideum OX=44689 GN=dtymk PE=3 SV=1 |
| P23919 | Thymidylate kinase OS=Homo sapiens OX=9606 GN=DTYMK PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006821 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02223 all species → | Thymidylate_kin | Thymidylate kinase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018095 all species → | Conserved_site | Thymidylate kinase, conserved site | Interproscan |
| IPR018094 all species → | Family | Thymidylate kinase | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR039430 all species → | Domain | Thymidylate kinase-like domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10344 all species → | THYMIDYLATE KINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004798 all species → | Molecular Function | thymidylate kinase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006233 all species → | Biological Process | dTDP biosynthetic process | Interproscan |
| GO:0004550 all species → | Molecular Function | nucleoside diphosphate kinase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006227 all species → | Biological Process | dUDP biosynthetic process | Interproscan |
| GO:0006235 all species → | Biological Process | dTTP biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00943 | tmk, DTYMK; dTMP kinase | EC:2.7.4.9 | Pyrimidine metabolism | ko00240 | deepkoala |
Genes whose expression across the transcriptome samples of Actinoscyphia liui tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinoscyphia liui, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
