Gene detail

Detailed information of gene16700.t2 in Actinoscyphia liui

Genomic Location: chr4:49659250...49696070
NR annotation: XP_020896544.1, probable glucuronokinase 2 isoform X2 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene16700.t2

TGTTGATGTGGTTTTCTGTTAAATTTTTAATGATCGTGGTGGATTTATGTGTCCTTTCGTAGAGTGGATCAAAGATGATTTGTATAGTTCTAGTGGCTGGACATGGCACACTGCTAGAGAGAGAGATAAAGGAGGATGACACAGGGAGATATGCAGACTTACAAGGGGTCCCCAAGGCTTTACTACCAGGTGTCGGCAATAAATGTATCCTGGACTTTTGGTGGGAAGCCATCAAAATGAGACAGTTGTTTGTGGATGTATTTCTTGTCACAAATGCAGACAAGTATAAGTATTACGAGAGATGGGCTACAGCGCATGACTTCCCTGTAGAAAACATTGTGAATGATGGCACTACAACCTTTGACTCAAGAATAAACAGTACATTGCACCAGAGAAAGAAAATGAGGATGTCAAACTATTCAACTAATGGGTTGGGTGCAGTGGCAGATTTTGAGTTGGTTTTGAGAACAAAAAACATCCAAGATGATGTGATGGTGGTTGCAGGGGATATGCTTTTTCAGGACCGTCACTTTGATATTGCACAAGTTATCAAGTATTTTAAGCTCAAGAAAGGAGAGCTGGCTATTTACTATGAGATGGATGACTCAGAGAAAACAGAGACAAGAGGAATAGTAGAAGTGTGTTCAGCTACTAACAGGATTGAAAGATTTTTAGAGAAGCCAAATCCAGACCAAACTTCATCTAGACTAGCAAGTGTGGTATTTTATTGCTTTCAAAGACAAACCCTTGGTACAATAGAGGTTTATCTAAAGGATAGAGCTCACCTAAACCAAAGAGGATTTGGAAGTTATATGGAGTGGCTTGTCAATCAAACACCTGTGTATGGAATGAAACTACCAACAGGCTTCCAACTAATAGGACAAGTGGGTTTATCTGAATACGAGAAGTGGATTGCTTACTTCTCTAAAATGACTCAATCAGGAAACAAATTACAACATTTTACTGTGAGAGCCTATGCAAGGATTGGTCTGATGGGTAATCCATCTGATGGCTACCATGGTAAAACTATTTCACTGTCAATAGCTAACTTCTGGGCCGAGGTCACCATCCATGAGAGCCAACATTTGGTGCTGTTGCCGCACCCACTTAATGATCCTACTGAATTTGGTAGTCTTGGTGACCTTCATGGAATCAGCAGAAAAGAGGGGTATCTTGGTGGACTTCGTCTGCTGCAAGCAACTTGCAAGAAGTTCTACCAGTATTGCTATGAGAAGGGAATTGCACTCCCTAAAAAGAATTTTACACTGAAGTATGACACTAATATCCCTAGACAAGTGGGTTTAGCTGGGAGCAGTGCAATAGTAACAGCCACATTACGATGTTTAATGAACTTCTACAACCTGACTGAAAAGGATATTGCAAAACCTCTTCTGCCCAAGTTTGTATTAGGTGTGGAAATGGATGAGTTGTTCATTCAGGCAGGGCTGCAAGACCGTGTCATTCAGATTTATGAAGGCCTGGTGTATATGGACTTTAACAAAGATTACATGGAGGAACACGGTCATGGTGAATATTCCAATCTTGATGTAAACGATGTCCCTAATCTATGGCTGGCTTATTACACTGATCCTAGTGATTCTGGTAAAATCCATAGCAATGTGAGATTAAGATGGAATCAAGGGGATCCTGTGATCATTGAAGCTATGCAACAGTTTGCAGAATTGACAAATTTAGCTAAGAAGGCACTAGTTGAAAGGGATTATGAGAAGCTTTCAAATCTGATGAATCAAAATTTTGACCTCAGAAAATCTATTTATGGTGATGAAGCTCTTGGTCAGACAAACCTGAAGATGATTCAGCTTGCAAGACAGTTTGGATCATCAGCAAAGTTTCCTGGAAGCGGAGGTGCTGTCATAGGACTATGCCAAGACCATAGACAACTGGAGGAGTTAAAAAGAGCTTTTCAAGCAGAAGGTTTTGTTGTATGTGATATTGTACCATATTCACCATAGTAGACAATGTTTTACATTTTTAAATATATTATAGGTAAATTCAATGAGTGACAAGGGAATTCCACGTTGAATTTCACGCGAAATACGATATCTCACGAGTCACGCAGCGATGAGTGCGATATGGGTTTTTCAAGTGCAATTCAATGTGGAATTCCTGAGTCTGGAAATGAATTTACCTTGAATCCTAATGGCACTCATTTCCTACCGATATTGCAAAACATAGGATTCCATAGCAAATTCAGAACAAATGTTGTTGGCGTCAAAAGTAACAAGCATCAAGCTTAAAGACCGAACTTGTTCCTAGCTATAGAACTAATTACAAAATGTGAAAATGTTTGTGCACAATTTTTGATATCACACTTAGATTGATAATTATAAATAAAATAAGTCTGGTTGGAGAAATTACCAACATTTTGGTCTTGGCTTGAAGGCTGTTGTTGTTTTGAACATGACAACATTTTAGACATACCTGTAGGTATTAATATGACTACTATGAATGTCCAGTAAGAAATTGAATGGGTCCATGTAAGAACAACATTTTAGACATACCTGTAGGTATTAATATGACTACTATGAATGTCTAGTAAGAAATTGAAGGGTTCCATGTAAGAACAACATTTTAGACATACCTGTAGGTATTAATATGACTATGAATGTCCAGTAAGAAATTGAAGGGGTTCATGCAAGAACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9LY82	Probable glucuronokinase 2 OS=Arabidopsis thaliana OX=3702 GN=GLCAK2 PE=2 SV=1
Q93ZC9	Glucuronokinase 1 OS=Arabidopsis thaliana OX=3702 GN=GLCAK1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011988 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00483 all species →	NTP_transferase	Nucleotidyl transferase	Family	Interproscan
PF00288 all species →	GHMP_kinases_N	GHMP kinases N terminal domain	Family	Interproscan
PF08544 all species →	GHMP_kinases_C	GHMP kinases C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005835 all species →	Domain	Nucleotidyl transferase domain	Interproscan
IPR006204 all species →	Domain	GHMP kinase N-terminal domain	Interproscan
IPR036554 all species →	Homologous_superfamily	GHMP kinase, C-terminal domain superfamily	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR053034 all species →	Family	Glucuronokinase-like	Interproscan
IPR013750 all species →	Domain	GHMP kinase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38710 all species →	WITH PUTATIVE URIDYL PYROPHOSPHORYLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0047940 all species →	Molecular Function	glucuronokinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16190	GLCAK; glucuronokinase	EC:2.7.1.43	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.