Gene detail

Detailed information of gene16960.t2 in Actinoscyphia liui

Genomic Location: chr4:53993027...53997287
NR annotation: KAJ7389442.1, DMRTA motif [Desmophyllum pertusum]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene16960.t2

CAGTAGTCTGGCTATCGTCTGAACGGAGGGAATATCTCTTGGGACTAAATTGAAGTCAAGGGCAAGTAATTGCTGCAGTTCACGGAGATACATGGTTGGATATATTATAACCAAAGCCTCCAAGTACACTTCCATCCACCGTTCTATTTTCTTTGGTCTTGCGTTGTTGTTAATCGATGGTGTTAACGTTGCTTTTTGCTGAAACAATTTTACAAATTTATCAACACAGTTGTAAGATACTTGGCAGATTCTTGCCGTGTTAGCAGTGGACTGCGTAGTCAGATAAGTAACGATAACCTGAAGTCGTTTCTGGGACGGATAAATGCAGCCATACCTGTAGCAACCACCTTTTTCATTTAAATGCCAGGGCATCACTCGGTTTAACTGACGTTTCGAATTGCCTTTGCTCTAGCTCAGTAGTTTGTGCATTTCAGTCTGCAGTGTTTTTTAACGAATAATTCTATTGATGGCAGCGAAAGGCCAGTTATTATTGTTTTATGCAAATATTTCACAAAGCATTTGTTATTGGTTTTTGATGTTGTTTTATTTTTATTGTAGGGGTGTGACATTGGAAATACCCATGACACAATAATCGCTCGTTGTTTTGTAGTTGACAAAATAATCTAACAACTCTCATTTTCTCGGTATAGCGATTGAATACTCATGAAAATGACGGATATAAACAAAACAGATTGTTTCGTGCACCCAACGGCTTACAGCTGATTTTGCACTACATCTATAAAAAGCTTGATACACGACACACAAGTTCACAGTTATTACCAATTTTGCGAAAGAGAGGTCGAAAGCTATCAGCGAAGGTTTCTTCAGTCATGTCCACTAGATCTTGTACCAAATGTCGTTTGCATGGACAAGTTGAAGTCCTAAAAGGTCACAAAAGAGTATGCCCGTATGCGAATTGTACATGTAATAAGTGTGCAAGTCATGACCACGTATTGGCACACAAAAATAATCTCCGAGACGAAAAGAACGACAAGGGGAAACTGTGGAGGCGCGCTCTTTCTCATACTCTGTCCAAGCCGTCAAGCACTGCCACATTTCCAGAAATGTCTGTCAGCGAAGGGAGTGCTCAAGGACAAAATGCAATGTTGGCTTTCCAGATGGCAAACTTCGAAGATGCCAAAGCTACTGTCGAAAAGAAAAAGACCAAGGCCGAAAAACGAAAGGCTAAGCAAATGCTTCAGCTGGAAAAGCACAAAGCCCTTTACAACAGCATAAATGTGTATTCTCAAGAGATAGCCACCTCTTCTCCGGGGCTAAGTCCCTTGACGGTGTTAAAAACGGCTATACAGCTTCACCAACAAGAACCAAGGGTAGAAAAGCATGAAACAGAAGACCTAAAATCAAAAGCATTGCCTCTCGTTCAAGCACCACTTCCAGCGCATTTGCTCTATAATCAGAGGGTAATTCAGCCATCGCACTTTGAAGATAAATTGGAGCAACTAAAATCGGTTCTGCCCTCGGCTTCTGATGTGAAATTGGCGGCATTACTGACCCGTGAAAAGGGAGATCTGAATGCAGTGGTACAGTGCATATTAGAAGAACCAGCCGAGGCAGAGGATGAAGCGACAAGTAAAACACTTGAAATGGCGAGTGCCATCGATTTGACGGACGAACCTGCTTCATCGTTTGAGAAGTCGATAGCAATAGATCTGACTGAGGAGTGTGATTCATCACCAAGACCTACATATACCACATACGAGTGTGCGTTGTCCAGTGTAGGGCAAATTGATGTCAAGGCAAGCACTCTCGCCGACATCTTAGCAACTGTCAGGGAAAAAGAGCTGGAACCAGTGGAGTCATCTGCAGAGCCAAACCTCTTGTCTTTCTGCCGTCCTAATGCAGCAAGTAGCCAATTTGCAACTGATGAGCCAAACGAATCGAGTAAACAGCTGCCTTGGAGGATGCCAAGGGTCTTTACTTCCGACCAGGATTATTGTCCATATTGCAAAGTGCCAAAGTGCAACGCAGAAGAGGACAAATTTTGTAGTTCTTGCGGAGACAAACCAAGGAATGTTCAAGTTGTACCACAGAGTCTGGTGTTAAATGAAACTAAGTCATTCAATCTAACGTGTAATGCGTCTGCTTATCCTGCTGGTAACTACTCATGGTCATTGAATGGACGAGTACTGGTTGGTGAAACTAACCATGTATTAACCAGACACAATGTAACAGCAGACGATGCTGGGAATTATACCTGCACTGTTACTAATTACCTTGGTAGTGCAGACAGCATGTCATCAATTGGTATTCAATATAAGCCAGCGATGCAGTGTCAACGTTTCCTCCATGTAGAGGAAGGTGGTGAAAGTAAAGAGTTTAAGTGCAACATGGCGAGTGGGTACCCTAGCCCTGTATATACCATACTGTATAAAGGGGAAGAGCACAGCAAATCATCCTTACTACTTAACAACGTTACCAGGGACAACAATGGTTCAGTGATTCGTTGCACTGCTTCAAACTCTCTTGGGTTTTATCACTGTGATACCACTTTGATTGTGTCATCAGGACACAATGACCGTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20241	Neuroglian OS=Drosophila melanogaster OX=7227 GN=Nrg PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003409 (this species only)
Transcription factor family	DM · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00751 all species →	DM	DM DNA binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR001275 all species →	Domain	DM DNA-binding domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036407 all species →	Homologous_superfamily	DM DNA-binding domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR051275 all species →	Family	Cellular adhesion and signaling domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11640 all species →	NEPHRIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene16960.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.