Gene detail

Detailed information of gene17006.t2 in Actinoscyphia liui

Genomic Location: chr4:54645391...54668807
NR annotation: XP_020907388.1, signal recognition particle receptor subunit alpha isoform X1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene17006.t2

CAAAATGTTGGATCTTTTTACGATCTTTTCTAAAGGAGGAATTGTCCTTTGGTGCTTCCAAGGCACATATCAATCTTTTACACTTCCTGTAAATGAACTGATTCGAAGCGTTATCCTTCAGGAACGAGGAGGTGGCAATGCTTTCTCACACGAATCTCTCACACTAAAATATAAACTTGATAATGAGTTTGAACTGGTGTTCGTGGTGGCTTTTCAAAAGATTCTCCAGTTGTCTTACATTGACAAACTACTAAATGACTTACAGTTGGAATTCAGGGATAAATACAAGGATGACTTAGGTAAAGGTGTTATAAGGAACTATGAGTTTACAGATGAGTTTAATCGCTTACTCAGAGAAGCAGAATCTAGTAGTAAAGTTGAAGCATCCTTACCTAAGAAGATGCGAACTTTTGGAGAATCCAAAAAATCACAGAAGACCGTGGCATCTATGATTATTAAGGGAGATGATGCAAAAACTGGGAAGAATGGAAAAGGGAAGAAAAATGAACAGAAAGAACAAAAAGAAGTGTCTGCTGGTAAAGATTCCAACTCTCCTGACCCACCAGTAGTCAGTAATGGAGGAGCTGGCTTGACTGCTGAGGAAATACAGAGAAACAAAGAAAAAATGTTGAAAAGACTTGCTGGTAAACCACAGAAAGTGACAACTAGTAAACCATCGCCAGTACCTCGTAAAGACCGCAAGAAGGTTAAACGTCAGTGGGATAATGCTGGTAATAATAAAGACATGGAGACATTGGACTTTAGTTCTGCTAATGGACAGGACAAAAACAATGCACAACAAGATGATGATGAAGAATTTGAAAACATGAAGGGCGAGCTGATTGGTTCCATGGTTGGTGAAATCAAAGAAATGGAATATGTAAGTGAGAGTGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGTGGAGGAGGAAGCTAAGACTACTTCAACATCTAGCCAAAGTGGAGGTGTATCTGGCTTGACAGGGGGAGTATTTTCCTTCTTCAAAGGTCTTGCAGGACAGAAAACCTTGACCCAAGAACAGATTGCACCAGTGCTTGACAAGATGAAAGATCACTTGATTGCTAAAAACGTTGCTGTAAATATTTCTGAGCAACTGTGTCAGTCAGTGGCTACCAAACTAGAAGGAAAAGTAATTGGCACATTTAGTGGTATTACATCCACTATCAAGGCAAGTATTGAGGAGTCTCTTATCCAAATCCTGTCTCCAAACCGTCGAGTGGACATCCTGCGTGATGCCATGGAAACCAAGAACCATGGTCGTCCTTACGTTGTTACATTCTGTGGTGTCAATGGTGTTGGCAAGTCCACCAACTTAGCCAAGATTTGTTTCTGGCTTCTTGAGAATGGTTTCCGTGTGATGATTGCGGCATGTGACACATTTCGTGCCGGTGCTGTAGAACAATTACGCACCCATGTACGTCATCTCAATTCCCTTCACCCACCCCCTAGGGAAAACAGTCCACCTTCAGTCATGCTGTACGAGAAAGGTTATGGAAAGGATGCTGCTGCCATTGCAATGGATGCCACTAATTTTGCTCGTGAACAGCGTGTTGATGTTGTGCTGGTAGACACAGCTGGACGAATGCAGGATAACGAGCCTTTGATGCGCGCTCTGTCCAAATTGATAAAACTCAACAATCCAGACCTGGTGCTGTTCGTTGGTGAGGCTCTGGTGGGCAACGAGGCTGTTGATCAGCTGTCTAAGTTTAACCAGGCGTTAGCTGACTACTCCAGCCAAGAGAACCCACGGTTGATTGATGGCATTGTACTTACTAAGTTTGACACTATTGACGACAAGGTTGGTGCTGCAATCTCAATGACGTACATCACTGGACAACCCATCGTGTTCGTGGGGACTGGACAGACGTACCGAGATTTGAAAAGTCTGAATGTAAAGGCAGTGGTGCATGCTCTATTGAAGGCATAAAACAAAACCTCTATTTATGGATGGATACATTATATCAACCATTATCAATACTAAAGTTTTAATCCACAAATATTCATATGCATATGTAATTAGCTTATTTGATGAAATATTGGTGAAAACTCGTCCCAGACCCAGCTCTTTTCTCTTTGAAAAGGAATGGGAACGAAACTGAGCAATTAGCCATTTAAAAAACCAGTAGAGGACTGGGAACAAGATTTTAAAATTAATCTAATTAAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3MHE8	Signal recognition particle receptor subunit alpha OS=Bos taurus OX=9913 GN=SRPRA PE=2 SV=1
P08240	Signal recognition particle receptor subunit alpha OS=Homo sapiens OX=9606 GN=SRPRA PE=1 SV=2
P06625	Signal recognition particle receptor subunit alpha OS=Canis lupus familiaris OX=9615 GN=SRPRA PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006629 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00448 all species →	SRP54	SRP54-type protein, GTPase domain	Domain	Interproscan
PF02881 all species →	SRP54_N	SRP54-type protein, helical bundle domain	Domain	Interproscan
PF04086 all species →	SRP-alpha_N	Signal recognition particle, alpha subunit, N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000897 all species →	Domain	Signal recognition particle, SRP54 subunit, GTPase domain	Interproscan
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR042101 all species →	Homologous_superfamily	Signal recognition particle SRP54, N-terminal domain superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR013822 all species →	Domain	Signal recognition particle SRP54, helical bundle	Interproscan
IPR036225 all species →	Homologous_superfamily	SRP/SRP receptor, N-terminal	Interproscan
IPR007222 all species →	Domain	Signal recognition particle receptor, alpha subunit, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43134 all species →	SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0006614 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005047 all species →	Molecular Function	signal recognition particle binding	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006605 all species →	Biological Process	protein targeting	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0045047 all species →	Biological Process	protein targeting to ER	Interproscan
GO:0005785 all species →	Cellular Component	signal recognition particle receptor complex	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13431	SRPR; signal recognition particle receptor subunit alpha	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.