Gene detail

Detailed information of gene17550.t2 in Actinoscyphia liui

Genomic Location: chr5:1241754...1243782
NR annotation: XP_031552567.1, ATP-dependent DNA helicase PIF1-like, partial [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q196V4	Uncharacterized protein 106R OS=Invertebrate iridescent virus 3 OX=345201 GN=IIV3-106R PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000131 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05970 all species →	PIF1	PIF1-like helicase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010285 all species →	Family	DNA helicase Pif1-like	Interproscan
IPR051055 all species →	Family	PIF1 DNA helicase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47642 all species →	ATP-DEPENDENT DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15255	PIF1; ATP-dependent DNA helicase PIF1	EC:5.6.2.3	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.