Gene detail

Detailed information of gene17596.t1 in Actinoscyphia liui

Genomic Location: chr5:1983229...2011741
NR annotation: XP_020905681.1, acetyl-coenzyme A synthetase 2-like, mitochondrial [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene17596.t1

ATGGCGTGCTTGACCATGACTCGAATTCTGATTCCTCGCCGAGCTTCTGTAACTGTGTGTAGAGGTGTATCATCGTTCTTTAAGAATGATTACACTCCTCCAAGATTGAGCTATGTTTCACCGGAGAATGACCTTCAGTACGATCATAGTATTCAAGATGCTGAGTCGTTCTGGGGACAGCTTGGAGCGACTCATCTGCAATGGCGGAAACCCTTCGATACAGTTACTGACTGCAATATGCATGAAGGACAGCATAGATGGTTCTTGGGTGGACAAATTAACGTTGCAGAAAACTGCGTTGATCGTCATATGAGATCTAATCCTAATCGTACAGCCCTTATTTGGGAAAAGGACGAACCAGGAGATGTCGAGCATGTTTCATATATACAATTATATGAAATGGTAAACCGAATGGCTAATATGCTGAAGAGTCATGGTATTAAGAAAGGAGATATAGTTTGTATCTACATGCCAGTATCTCCATTGGCTGTCGCTGCAATGTTAGCTTGTGCCAGAATAGGAGCCCCACACAGTGTTGTATTCGCTGGATTTAGTGCGGATGCATTGTCAAGCAGAATAAATGATGCTCAAGCAGAAACAGTGATTACTTCAGATCAGATATTACGAGGTGGTAAAGTTTCAGAACTGAAGAGGGTTGTAGATGAAGCTGTTTCTAAGAGTCCAGGTGTTAAAAGAGTGTTTGTCATGAAACGGACTGGTGGCGATGTTCCTATGGGAAAACTAGATATTCCCTTAGAAGAGGCAATGGCAGAGCATCCAGTAGAATGTGAACCTGAGAGTCTAGATAGTGAGGACCCATTGTTCTTATTATACACCTCTGGTAGTACAGGCCAACCCAAGGGCATTGTTCACACACAGGCTGGATATTTACTCTATGTCAGCCTTACAATGAAGTATTGCTTTGACTATCAAGAAGGAGACATATTTGGCTGTGTTGCTGATATAGGATGGATCACTGGTCACTCATATGTTGTATATGGTCCCTTGTCTAATGGGGCAACAAGTGTTCTCTTTGAAAGCACCCCTACATATCCTGACCCTGGACGGTACTGGGACATGGTGGAACGACTCAAAATTAATCAATTATATAGTTCTCCTACTGCTATCAGACTGCTGCTAAAGTCAGGTGATTCTCATGTCACCAAGTATGACAGGTCATCATTACGTGTCTTAGGAACTGTTGGAGAACCAATCAATGATGAAGCCTGGCATTGGTATAATGACATTGTTGGTGAAAAGCGTTGTACTGTAGTGGACACATGGTGGCAGACAGAAACTGGTGGTATTCTAATCTCGCCAAGACCATCTGCTTATAAAGAACCTGTGAAGCCAGAATTCCCAATGAGGCCATTCTTTGGAGTAGAACCAGTTTTAGTAGATGAGAAGGGAAAAGAACTGACTGGGAACAACGTCAAGGGAGCTTTGTGCGTCCGTTCGTCAGTACCAGGAATGTGCAGAACCATATATGGTCATCATGAGAGGTACCTGGACACATATTACCGACCCTTCCCTGGGTTTTATTTTACTGGTGATGGTGCCTTACGAGATAAAGATGGTCACTACAGGATCACAGGTCGAATGGATGACGTCATTAATATCAGCGGCAAACGACTGGGAACAGCGGAAGTAGAAGACGCCATGGATAATCACCAAGCCGTAGCTGAGACTGCTGTAGTTGGATTTCCACATCCAATCAAGGGAGAAGGTATTTACGCATATGCAACTCTTAAAGACGATGCCGACATAACACCAGAACAACTAAAAGCAGATCTCAAACAGATTGTACGAACAAAGATTGGTGGATTTGCCGTCCCTGAGATAATCCAGGTAGTACCCGGTCTTCCCAAGACACGTTCAGGCAAAATCATGCGTCGTATTCTACGTAAGGTAGCTCAAAACAAACCTGACGAGCTGGGAGATGTGTCCACCCTGGCTGACCCTTCTGTAGTAGAGATCATCGTAAAACAACATGCACAGCAATCCTACTTTCCTACTACTGAGCGCTTCTCGCTGCAAACAGTTACACCTGAAGACGTTTACAAAGAACTGAAATCATTGCATTCTGAGTGTTCCACTGGCTATGATAATATCTCCATAAGACATATCAAACCAGCAGCCGAAGCATTGTCGTTACCCCTTGCTCACATTATTAACACAAGCATCCTCAAATCTAGTTTCCCATCACAGTGGAAAATCGGTCGTGTTGTACCCATCCCAAAAGCGGAAAATCCCGTCCACAATGACGAATTTAGACCAATCACCATACTTCCAGTTTTGTCCAAAGTCTTAGAGAGAATTGTTCTGCAACAAACTCTAGGCTTTATCGATAGAACCAGCTTACTCCACGACAACATGTCTGGTTTTAGGAGAGGGCACAGCACTACAACACTTCTGATGAAATTGCGCGATGATATCATCTCTAGTATGAAGAACTCTGAAGTAACCATGATAGTCATGGCTGACCTTTCAAAGGCCTTTGATACTTTAAGACTCAAAACTGCGCTAGAAAAACTTCACCATCTGGGTTTTTCCTCCAGCTGTGTTCGTTGGTTTGCCAGCTATTTGTCCAACCGGAAGCAGTTTGTGATGGTTAACGACCGCAAAGCTAAGCAAACCCCGACTTACTTCATATTAATGGCACACCTCTCCAACGTAAAACCACCTACAAGCTACTTGGTATCCAATTCAATGAACATCTAA

Transcript

gene17596.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99NB1	Acetyl-coenzyme A synthetase 2-like, mitochondrial OS=Mus musculus OX=10090 GN=Acss1 PE=1 SV=1
Q9NUB1	Acetyl-coenzyme A synthetase 2-like, mitochondrial OS=Homo sapiens OX=9606 GN=ACSS1 PE=1 SV=2
Q0AAW0	Acetyl-coenzyme A synthetase OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=acsA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000999 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF16177 all species →	ACAS_N	Acetyl-coenzyme A synthetase N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR032387 all species →	Domain	Acetyl-coenzyme A synthetase, N-terminal domain	Interproscan
IPR011904 all species →	Family	Acetate-CoA ligase	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24095 all species →	ACETYL-COENZYME A SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003987 all species →	Molecular Function	acetate-CoA ligase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006085 all species →	Biological Process	acetyl-CoA biosynthetic process	Interproscan
GO:0016208 all species →	Molecular Function	AMP binding	Interproscan
GO:0019427 all species →	Biological Process	acetyl-CoA biosynthetic process from acetate	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01908	ACSS3, prpE; propionyl-CoA synthetase	EC:6.2.1.17	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.