Gene detail

Detailed information of gene17929.t1 in Actinoscyphia liui

Genomic Location: chr5:9254193...9258436
NR annotation: MBN3305975.1, NYNRI protein [Amia calva]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene17929.t1

ATGAGTGCAGTCCTCTCACAGGTTCAAGAGGGCAAGTCCAGAGTTATATCTTATGCTAGCAAGAGCCTGTCATCTCCAGAGCAGCAGTATAGTGAGTGTGAGAAATATTGTTTTGCAACTACTTGGGCTATCTTACACTTCAAGCCATACCTGTGTGGACATCATGCCATTGTAAAGACGTCACACCATCCAGTGACTTATTTATCAAGCAAAAACAGCCAAGGTGAGCTCTCTGGACGTGTGGGCAAGTGGGCCCTTGTATTGCAAGGACAGTCGTTTGAAGTACAATATAGTAAAAATCTCAATATGAAACATGTTGAAGGTTTAGCAGCACTGCACGATTGTAGCATCGAACACAGAGAGTTGGAGAGTGATGATTTACAACCGGCATTGAGACACCATAAATGGGACCCACAACTTTGTGTAAATATGGAATGTGTATATGCTGATGGGTGTTCAGTCACATATGAAGACCAGGAAACCAAAGCTGGTGCTGGAGTATATTGGCCTCAAGCTGAGTTCAACAAGTATAGCTGTGGATATCAACTGGGTAACCAAACCTCACAGTATGCAGAACTTGCAGCTTCTCTAATTGCTCTGACAAACGCTATTGACTTAAACCTAAAGGAGGTATCTTTCCTAGAATACCTTCCAAGATGGTCGAGGTCTGGAATGATGAATAGTAAAGGAAAACAAGTGAAGAATGCACATATCATTGCAGCTATTGAGTCTGTAGTTACCACCTCACAAATGGATGTCTATTGGAAGAAAGTGAAAGGCCACAGTCAAAAGAGTGGACAAGACAAAGAAGGAAATGACCAGGCAGACAGCTTTGCTAAGGATGGAGCTACATGTAAGAGTGATCAGAAATGGGAATTAGACCCAACTCTCATTCCAGAGGGAGTCTATAACATTATGACATTGACACCCAGCAATGGAGACCAGAGACAAGACTTGAGCAACCAAGTGTCCTCGGACAGTACCACCACAGTTAACCAAGTTAATGCATGTAACCTCTACCCTGAGGAGCCTAGTGAAGACCTAGTTCAAGCACAAAATGATGACCCTAGTGTTAGTCCTTTAAAGAGATTGGTAGAGGGTAAAATAACAGAACTCTCACCTGAAGCTCTAAAGAACAACAGAGAACTAAGACTGATGTATAAAAGAAAGGACTGTTTCACAGTAGAAAAAGGGTTGTTGATGTTTACCAAGGAGCAAGAGGGTTGCCAACTTAACTATGTTGTGATACCAAAGTCCTATCGAGACCTGTACATGTGGTATATCCATGATCACCCTACCTCGGGACACAGAGGAGTTGATAATACTTACAAGATTGCAGCTCAGTCTGCATTCTGGCCAAACATGCACAAGGACATCAAAGACTATGTGCAACGTTGTATGATATGCTGTCGCCATCTCCCGAAGAAGTGTATGTATAAAGCACCATTACGCCCCAGACTTACTGCTTCACCCTGGAGTCATGTCATGATAGACTTTGTTGGACCATTGGTTAAAAGTTCTAGAGGAAACCAATACTGTTTAGTGCTGATAGATCTATTCTCTAAGTATGTGGAAGTACTTCCTACGAGGAACATGGAAGCCGAGACAGTTGCAAGAATGCTTGTCCACCATGTTTTCAGTAGATGGGGACTGCCTACCAAGTTATCATCAGATCAAGGTACTCACTTTACGGGTAAAGTTGTTCAAGAACTTTGTAGAATCCTTGAAATCAAACAAAATTTCCACATATCATGGCATCCCGAGTCAGGAGGAGCAGTAGAAAGGGTAAACAAGACCATAATGGAAGCACTAAAGAAGTATGTTAACGGATCTGGCAAAGACTGGGACTTAACACTACCACTTGTACTGATGGCTTTGAGATCGACACCTCATGGCACTACAGGAGTGTCACCACATGAGGTAATGACGGGTCGACGAATGATCCTTCCACATCATTTGGAGAATCTTAGACAAACATTTGCCTTCGTGAGGGAGAACCTGGAAGCAGCTGCAAGAGTTAACAAGAACATTTATGACCGAAGGGCTACTAGCAAAGAATACAATATTGGTGAGAAAGTCTACTACTTCAAATTCATTAACATGAAAAAGCAAAGGAAAAAGTTTCTTACGTGTTGGAGTGGACCATACAAAATCACCTACAAGGCTTCCCCAGTGGCTTATCAAATTGACATCAATGGTAAAAGAAGGTGGGTCCACGCCAACCAGTTAAGACCATACTTTGGACCCGCTCCACCACAGAACACAGACCCCAGCAGTGACCTCAACTATTCCATCTTTAACCTTTGA

Transcript

gene17929.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O92815	Gag-Pol polyprotein OS=Walleye dermal sarcoma virus OX=39720 GN=gag-pol PE=1 SV=2
A4FUB7	Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus OX=9913 GN=GIN1 PE=2 SV=1
Q5RBK0	Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii OX=9601 GN=GIN1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0022855 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00075 all species →	RNase_H	RNase H	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR002156 all species →	Domain	Ribonuclease H domain	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0004523 all species →	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene17929.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.